Independent stratum formation on the avian sex chromosomes reveals inter-chromosomal gene conversion and predominance of purifying selection on the W chromosome (Q34781903)

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English	Independent stratum formation on the avian sex chromosomes reveals inter-chromosomal gene conversion and predominance of purifying selection on the W chromosome	scientific article

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10 March 2020

Independent stratum formation on the avian sex chromosomes reveals inter-chromosomal gene conversion and predominance of purifying selection on the W chromosome (English)

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10 March 2020

Peter W Harrison

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10 March 2020

Stephen H Montgomery

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10 March 2020

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10 March 2020

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Alison E Wright

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10 March 2020

Marie A Pointer

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10 March 2020

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29 August 2014

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10 March 2020

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10 March 2020

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10 March 2020

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10 March 2020

3281-3295

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10 March 2020

Inter- and intraspecies phylogenetic analyses reveal extensive X-Y gene conversion in the evolution of gametologous sequences of human sex chromosomes

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7 July 2018

Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators

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7 July 2018

Natural selection reduced diversity on human y chromosomes

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7 July 2018

Comparative sex chromosome genomics in snakes: differentiation, evolutionary strata, and lack of global dosage compensation.

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7 July 2018

Recombination dynamics of a human Y-chromosomal palindrome: rapid GC-biased gene conversion, multi-kilobase conversion tracts, and rare inversions

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7 July 2018

The scope and strength of sex-specific selection in genome evolution.

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7 July 2018

Comparative analysis of mammalian Y chromosomes illuminates ancestral structure and lineage-specific evolution

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7 July 2018

The duck genome and transcriptome provide insight into an avian influenza virus reservoir species

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7 July 2018

Testing for the footprint of sexually antagonistic polymorphisms in the pseudoautosomal region of a plant sex chromosome pair

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7 July 2018

Expansion of the pseudo-autosomal region and ongoing recombination suppression in the Silene latifolia sex chromosomes

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

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Sex-biased gene expression at homomorphic sex chromosomes in emus and its implication for sex chromosome evolution

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7 July 2018

RNA sequencing reveals sexually dimorphic gene expression before gonadal differentiation in chicken and allows comprehensive annotation of the W-chromosome

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7 July 2018

Progressive recombination suppression and differentiation in recently evolved neo-sex chromosomes

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7 July 2018

Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration

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7 July 2018

Differential analysis of gene regulation at transcript resolution with RNA-seq

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7 July 2018

1 reference

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7 July 2018

Trade-off between selection for dosage compensation and masculinization on the avian Z chromosome

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7 July 2018

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

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7 July 2018

Identification of avian W-linked contigs by short-read sequencing

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4278454

7 July 2018

W chromosome expression responds to female-specific selection.

1 reference

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7 July 2018

Rapid de novo evolution of X chromosome dosage compensation in Silene latifolia, a plant with young sex chromosomes.

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7 July 2018

Loss of DNA methylation affects the recombination landscape in Arabidopsis.

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7 July 2018

Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes

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Expression divergence measured by transcriptome sequencing of four yeast species

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7 July 2018

Small but mighty: the evolutionary dynamics of W and Y sex chromosomes.

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7 July 2018

No excess gene movement is detected off the avian or lepidopteran Z chromosome

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4278454

7 July 2018

Nonrandom Gene Loss from the Drosophila miranda Neo-Y Chromosome

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7 July 2018

Are all sex chromosomes created equal?

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7 July 2018

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

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7 July 2018

Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis

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7 July 2018

Frequent gene conversion events between the X and Y homologous chromosomal regions in primates.

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7 July 2018

Detecting positive selection within genomes: the problem of biased gene conversion

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Can intra-Y gene conversion oppose the degeneration of the human Y chromosome? A simulation study

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7 July 2018

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

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7 July 2018

Footprints of inversions at present and past pseudoautosomal boundaries in human sex chromosomes

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4278454

7 July 2018

Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content

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7 July 2018

Drive against hotspot motifs in primates implicates the PRDM9 gene in meiotic recombination

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7 July 2018

PRDM9 is a major determinant of meiotic recombination hotspots in humans and mice

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7 July 2018

The avian Z-linked gene DMRT1 is required for male sex determination in the chicken

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7 July 2018

Comparative genomics in chicken and Pekin duck using FISH mapping and microarray analysis

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Evolution and survival on eutherian sex chromosomes

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Gene conversion between the X chromosome and the male-specific region of the Y chromosome at a translocation hotspot

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7 July 2018

Minimal effect of ectopic gene conversion among recent duplicates in four mammalian genomes.

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TopHat: discovering splice junctions with RNA-Seq

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7 July 2018

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7 July 2018

Hotspots of biased nucleotide substitutions in human genes

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7 July 2018

Characterization of the bovine pseudoautosomal boundary: Documenting the evolutionary history of mammalian sex chromosomes

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7 July 2018

The chicken (Gallus gallus) Z chromosome contains at least three nonlinear evolutionary strata

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7 July 2018

Gene discovery and comparative analysis of X-degenerate genes from the domestic cat Y chromosome

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7 July 2018

Natural selection in avian protein-coding genes expressed in brain

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7 July 2018

Genomic degradation of a young Y chromosome in Drosophila miranda

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7 July 2018

A new look at the evolution of avian sex chromosomes

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7 July 2018

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7 July 2018

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

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7 July 2018

Steps in the evolution of heteromorphic sex chromosomes

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7 July 2018

The DNA sequence of the human X chromosome

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7 July 2018

Positive and negative selection on mammalian Y chromosomes

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7 July 2018

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

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7 July 2018

MUSCLE: multiple sequence alignment with high accuracy and high throughput

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7 July 2018

Evolutionary strata on the mouse X chromosome correspond to strata on the human X chromosome

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7 July 2018

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7 July 2018

The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes

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7 July 2018

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7 July 2018

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7 July 2018

The degeneration of Y chromosomes

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7 July 2018

Four evolutionary strata on the human X chromosome.

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7 July 2018

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7 July 2018

Male-biased mutation rate and divergence in autosomal, z-linked and w-linked introns of chicken and Turkey

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21 January 2018

Gene conversion drives the evolution of HINTW, an ampliconic gene on the female-specific avian W chromosome.

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21 January 2018

Fast accumulation of nonsynonymous mutations on the female-specific W chromosome in birds

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21 January 2018

Substitution rate heterogeneity and the male mutation bias

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21 January 2018

Low mitochondrial variability in birds may indicate Hill-Robertson effects on the W chromosome.

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21 January 2018

Gene conversion among paralogs results in moderate false detection of positive selection using likelihood methods

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21 January 2018

The evolution of sex chromosomes

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21 January 2018

Plant Y chromosome degeneration is retarded by haploid purifying selection.

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21 January 2018

Next-generation sequencing strategies for characterizing the turkey genome

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21 January 2018

Male-biased mutation, sex linkage, and the rate of adaptive evolution

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21 January 2018

Detecting evolutionary strata on the human x chromosome in the absence of gametologous y-linked sequences

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21 January 2018

Recombination in the threespine stickleback genome--patterns and consequences

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21 January 2018

Calibration of avian molecular clocks

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21 January 2018

Strong regional biases in nucleotide substitution in the chicken genome.

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https://api.crossref.org/works/10.1111%2FEVO.12493

21 January 2018

Chromosome-wide gene silencing initiates Y degeneration in Drosophila.

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21 January 2018

Life history and the male mutation bias.

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Retroposon insertions and the chronology of avian sex chromosome evolution

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Genome-wide search of gene conversions in duplicated genes of mouse and rat

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12 December 2020

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Evolutionary pattern of gene homogenization between primate-specific paralogs after human and macaque speciation using the 4-2-4 method

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12 December 2020

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Identifiers

10.1111/EVO.12493

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25066800%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25066800%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

PubMed publication ID

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25066800%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

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