Applications of selective neutrality tests to molecular ecology (Q34764728)

4 August 2017

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title

Applications of selective neutrality tests to molecular ecology (English)

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4 August 2017

Michael J Ford

1

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4 August 2017

language of work or name

English

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publication date

1 August 2002

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4 August 2017

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4 August 2017

volume

11

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4 August 2017

issue

8

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4 August 2017

page(s)

1245-1262

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maintained by WikiProject

4 August 2017

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Genetic dissection of phenotypic diversity in farm animals

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Evolutionary rate acceleration of cytochrome c oxidase subunit I in simian primates

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The CD45 locus in cattle: allelic polymorphism and evidence for exceptional positive natural selection.

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Antarctic fish hemoglobins: evidence for adaptive evolution at subzero temperature.

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Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster

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Is the fast/slow allozyme variation at the Adh locus of Drosophila melanogaster an ancient balanced polymorphism?

21 January 2018

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Reduced X-linked nucleotide polymorphism in Drosophila simulans

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Evolutionary dynamics of plant R-genes

21 January 2018

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The molecular evolution of sperm bindin in six species of sea urchins (Echinoida: Strongylocentrotidae).

21 January 2018

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Rapid evolution in plant chitinases: molecular targets of selection in plant-pathogen coevolution.

21 January 2018

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RPP13 is a simple locus in Arabidopsis thaliana for alleles that specify downy mildew resistance to different avirulence determinants in Peronospora parasitica

21 January 2018

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Three genes of the Arabidopsis RPP1 complex resistance locus recognize distinct Peronospora parasitica avirulence determinants.

21 January 2018

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An investigation of the cause of low variability on the fourth chromosome of Drosophila melanogaster

21 January 2018

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Genome sequences and evolutionary biology, a two-way interaction

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Excess nonsynonymous substitution of shared polymorphic sites among self-incompatibility alleles of Solanaceae

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A delta 9 desaturase gene with a different substrate specificity is responsible for the cuticular diene hydrocarbon polymorphism in Drosophila melanogaster

21 January 2018

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The evolution of apical dominance in maize

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Molecular genetics of ecological diversification: duplication and rapid evolution of toxin genes of the venomous gastropod Conus

21 January 2018

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Evidence for adaptive evolution of the G6pd gene in the Drosophila melanogaster and Drosophila simulans lineages

21 January 2018

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Large-scale search for genes on which positive selection may operate

21 January 2018

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The sampling theory of selectively neutral alleles

21 January 2018

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World-wide variation in Drosophila melanogaster sex pheromone: behavioural effects, genetic bases and potential evolutionary consequences

21 January 2018

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Long term trends in the evolution of H(3) HA1 human influenza type A

21 January 2018

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The Wilhelmine E. Key 1999 Invitational lecture. Predicting the evolution of human influenza A.

21 January 2018

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Finding the molecular basis of quantitative traits: successes and pitfalls.

21 January 2018

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Molecular evolution of transferrin: evidence for positive selection in salmonids.

21 January 2018

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Natural selection promotes divergence of transferrin among salmonid species

21 January 2018

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Dichotomy of single-nucleotide polymorphism haplotypes in olfactory receptor genes and pseudogenes.

21 January 2018

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The neutral theory in an infinite population

21 January 2018

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Enzyme Polymorphisms in Man

21 January 2018

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Nucleotide variation in the triosephosphate isomerase (Tpi) locus of Drosophila melanogaster and Drosophila simulans

21 January 2018

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Major histocompatibility complex (MHC) variation in the endangered Mexican wolf and related canids.

21 January 2018

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Rapid evolution of fertilization selectivity and lysin cDNA sequences in teguline gastropods

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Accelerated evolution in the reactive centre regions of serine protease inhibitors

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Molecular adaptation of alanine:glyoxylate aminotransferase targeting in primates

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The arms race is ancient history in Arabidopsis, the wildflower

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Sequence, organization, and evolution of Rh50 glycoprotein genes in nonhuman primates

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How can the low levels of DNA sequence variation in regions of the drosophila genome with low recombination rates be explained?

21 January 2018

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DNA variation at the Sod locus of Drosophila melanogaster: an unfolding story of natural selection.

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The evolution of the type I interferon gene family in mammals

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Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection

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Adaptive evolution of animal toxin multigene families

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The neutral theory is dead. Long live the neutral theory

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Methods to detect selection in populations with applications to the human

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Molecular Evolution of Myelin Proteolipid Protein

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The Divergence of Species-Specific Abalone Sperm Lysins is Promoted by Positive Darwinian Selection

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Natural Selection and the Origin of jingwei , a Chimeric Processed Functional Gene in Drosophila

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Quantitative trait loci in Drosophila

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Improved tests for heterogeneity across a region of DNA sequence in the ratio of polymorphism to divergence.

21 January 2018

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Intragenic recombination and diversifying selection contribute to the evolution of downy mildew resistance at the RPP8 locus of Arabidopsis

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Episodic adaptive evolution of primate lysozymes

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Positive selection and sequence rearrangements generate extensive polymorphism in the gamete recognition protein bindin

21 January 2018

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Nonsynonymous substitution in abalone sperm fertilization genes exceeds substitution in introns and mitochondrial DNA

21 January 2018

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Receptor-like genes in the major resistance locus of lettuce are subject to divergent selection

21 January 2018

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Low major histocompatibility complex class II diversity in European and North American moose

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Sequence analysis of a polymorphic Mhc class II gene in Pacific salmon

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Molecular evolution at Mhc genes in two populations of chinook salmon Oncorhynchus tshawytscha

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Single nucleotide polymorphisms and recombination rate in humans

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The family of genes encoding odorant receptors in the channel catfish

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The importance of genetic diversity in livestock populations of the future.

21 January 2018

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All males are not created equal: fertility differences depend on gamete recognition polymorphisms in sea urchins

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The genetic architecture of divergence between threespine stickleback species

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Ecology. Stalking the wild mustard

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Population genetics of the porB gene of Neisseria gonorrhoeae: different dynamics in different homology groups

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Evolutionary adaptations of gene structure and expression in natural populations in relation to a changing environment: a multidisciplinary approach to address the million-year saga of a small fish

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Molecular population genetics of the Arabidopsis CAULIFLOWER regulatory gene: nonneutral evolution and naturally occurring variation in floral homeotic function

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Excess amino acid polymorphism in mitochondrial DNA: contrasts among genes from Drosophila, mice, and humans

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21 January 2018

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Tempo and mode of human and simian T-lymphotropic virus (HTLV/STLV) evolution revealed by analyses of full-genome sequences

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Episodic evolution of pyrin in primates: human mutations recapitulate ancestral amino acid states

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21 January 2018

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21 January 2018

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Dynamics of disease resistance polymorphism at the Rpm1 locus of Arabidopsis.

21 January 2018

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21 January 2018

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Rapid Evolution of a Homeodomain: Evidence for Positive Selection

21 January 2018

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Reliabilities of parsimony-based and likelihood-based methods for detecting positive selection at single amino acid sites.

21 January 2018

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Polymorphism in abalone fertilization proteins is consistent with the neutral evolution of the egg's receptor for lysin (VERL) and positive darwinian selection of sperm lysin

21 January 2018

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Evolutionary EST analysis identifies rapidly evolving male reproductive proteins in Drosophila

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Stomach lysozyme gene of the langur monkey: tests for convergence and positive selection

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Positive Darwinian selection drives the evolution of several female reproductive proteins in mammals

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The nucleotide changes governing cuticular hydrocarbon variation and their evolution in Drosophila melanogaster

21 January 2018

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Seed Banks and Molecular Maps: Unlocking Genetic Potential from the Wild

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21 January 2018

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A rapidly evolving homeobox at the site of a hybrid sterility gene

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Haplotype diversity and linkage disequilibrium at human G6PD: recent origin of alleles that confer malarial resistance

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Positive selection driving the evolution of a gene of male reproduction, Acp26Aa, of Drosophila: II. Divergence versus polymorphism

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Positive selection and the molecular evolution of a gene of male reproduction, Acp26Aa of Drosophila

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Positive Darwinian selection on two homologous fertilization proteins: what is the selective pressure driving their divergence?

21 January 2018

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The molecular evolution of vertebrate growth hormones: a pattern of near-stasis interrupted by sustained bursts of rapid change

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The limits of selection during maize domestication.

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Nucleotide variation along the Drosophila melanogaster fourth chromosome.

21 January 2018

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Molecular-functional studies of adaptive genetic variation in prokaryotes and eukaryotes

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Molecular population genetics of ref(2)P, a locus which confers viral resistance in Drosophila

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The effect of selective sweeps on the variance of the allele distribution of a linked multiallele locus: hitchhiking of microsatellites

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Recombination of hepatitis D virus RNA sequences and its implications

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Evidence for balancing selection operating at the het-c heterokaryon incompatibility locus in a group of filamentous fungi

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The diversity and evolutionary relationships of the pregnancy-associated glycoproteins, an aspartic proteinase subfamily consisting of many trophoblast-expressed genes.

21 January 2018

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Statistical methods for detecting molecular adaptation

21 January 2018

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Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

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Evolution of the rodent eosinophil-associated RNase gene family by rapid gene sorting and positive selection

21 January 2018

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Positive Darwinian selection after gene duplication in primate ribonuclease genes

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A codon-based model of nucleotide substitution for protein-coding DNA sequences

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12 December 2020

Molecular evolution of the teosinte branched gene among maize and related grasses

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12 December 2020

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

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12 December 2020

Reduced nucleotide variability at an androgen-binding protein locus (Abpa) in house mice: evidence for positive natural selection

1 reference

12 December 2020

Statistical Tests of Neutrality of Mutations Against Population Growth, Hitchhiking and Background Selection

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12 December 2020

Effects of natural selection on patterns of DNA sequence variation at the transferrin, somatolactin, and p53 genes within and among chinook salmon (Oncorhynchus tshawytscha) populations

1 reference

12 December 2020

Genealogical evidence for positive selection in the nef gene of HIV-1

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12 December 2020

Molecular population genetics of male accessory gland proteins in Drosophila

1 reference

12 December 2020

Hitchhiking under positive Darwinian selection

1 reference

12 December 2020

Extensive amino acid polymorphism at the pgm locus is consistent with adaptive protein evolution in Drosophila melanogaster

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12 December 2020

Genetic mechanisms for adapting to a changing environment

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Molecular analysis of an allozyme cline: alcohol dehydrogenase in Drosophila melanogaster on the east coast of North America.

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12 December 2020

Fast evolution of interleukin-2 in mammals and positive selection in ruminants

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12 December 2020

Variation and selection at the CAULIFLOWER floral homeotic gene accompanying the evolution of domesticated Brassica oleracea

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Haplotype test reveals departure from neutrality in a segment of the white gene of Drosophila melanogaster

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12 December 2020

Microsatellite variation and recombination rate in the human genome.

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Natural selection on Plasmodium surface proteins

1 reference

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A gene responsible for a cuticular hydrocarbon polymorphism in Drosophila melanogaster

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12 December 2020

The age of nonsynonymous and synonymous mutations in animal mtDNA and implications for the mildly deleterious theory

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12 December 2020

DNA variability and recombination rates at X-linked loci in humans

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12 December 2020

Identification of regions in which positive selection may operate in S-RNase of Rosaceae: implication for S-allele-specific recognition sites in S-RNase

1 reference

12 December 2020

Chromosomal patterns of microsatellite variability contrast sharply in African and non-African populations of Drosophila melanogaster

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12 December 2020

Properties of statistical tests of neutrality for DNA polymorphism data

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12 December 2020

Selection on X-linked genes during speciation in the Drosophila athabasca complex.

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12 December 2020

Positive selection in the evolution of mammalian interleukin-2 genes

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12 December 2020

Population genetics of polymorphism and divergence

1 reference

12 December 2020

A method for detecting positive selection at single amino acid sites

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12 December 2020

Nucleotide polymorphism and natural selection at the pantophysin (Pan I) locus in the Atlantic cod, Gadus morhua (L.).

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12 December 2020

Positive selection and propeptide repeats promote rapid interspecific divergence of a gastropod sperm protein

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12 December 2020

Circumsporozoite protein genes of malaria parasites (Plasmodium spp.): evidence for positive selection on immunogenic regions

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12 December 2020

Evolutionary inferences from DNA variation at the 6-phosphogluconate dehydrogenase locus in natural populations of drosophila: selection and geographic differentiation

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12 December 2020

Patterns of divergence during evolution of alpha 1-proteinase inhibitors in mammals

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12 December 2020

Positive and negative selection on the human genome

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12 December 2020

A molecular approach to the study of genic heterozygosity in natural populations. II. Amount of variation and degree of heterozygosity in natural populations of Drosophila pseudoobscura

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12 December 2020

The homozygosity test of neutrality.

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12 December 2020

Positive correlation between recombination rates and levels of genetic variation in natural populations of sea beet (Beta vulgaris subsp. maritima).

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12 December 2020

Episodic evolution mediates interspecies transfer of a murine coronavirus

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An unusual form of purifying selection in a sperm protein

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12 December 2020

A test of neutral molecular evolution based on nucleotide data

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12 December 2020

Speciation and domestication in maize and its wild relatives: evidence from the globulin-1 gene

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12 December 2020

Inferring the evolutionary histories of the Adh and Adh-dup loci in Drosophila melanogaster from patterns of polymorphism and divergence

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12 December 2020

DNA polymorphism at the cytosolic phosphoglucose isomerase (PgiC) locus of the wild plant Arabidopsis thaliana

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12 December 2020

Balancing Selection on Electrophoretic Variation of Phosphoglucose Isomerase in Two Species of Field Cricket: Gryllus veletis and G. pennsylvanicus

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Molecular variation at the vermilion locus in geographically diverse populations of Drosophila melanogaster and D. simulans

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12 December 2020

Molecular phylogeny of Fv1

1 reference

12 December 2020

High polymorphism at the human melanocortin 1 receptor locus

1 reference

12 December 2020

Background selection and patterns of genetic diversity in Drosophila melanogaster

1 reference

12 December 2020

Sequence variation at two eosinophil-associated ribonuclease loci in humans

1 reference

12 December 2020

Contrasting patterns of nucleotide sequence variation at the glucose dehydrogenase (Gld) locus in different populations of Drosophila melanogaster

1 reference

12 December 2020

Positive selection and interallelic recombination at the merozoite surface antigen-1 (MSA-1) locus of Plasmodium falciparum

1 reference

12 December 2020

Nucleotide Sequence Evolution at the κ-Casein Locus: Evidence for Positive Selection Within the Family Bovidae

1 reference

12 December 2020

Historical selection, amino acid polymorphism and lineage-specific divergence at the G6pd locus in Drosophila melanogaster and D. simulans.

1 reference

12 December 2020

Clinal variation for amino acid polymorphisms at the Pgm locus in Drosophila melanogaster

1 reference

12 December 2020

Positive darwinian selection observed at the variable-region genes of immunoglobulins

1 reference

12 December 2020

Multi-locus selection and the structure of variation at the white gene of Drosophila melanogaster

1 reference

12 December 2020

Molecular evolution of duplicated amylase gene regions in Drosophila melanogaster: evidence of positive selection in the coding regions and selective constraints in the cis-regulatory regions

1 reference

12 December 2020

Positive selection drives the evolution of the Acp29AB accessory gland protein in Drosophila.

1 reference

12 December 2020

Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class I major-histocompatibility-complex molecules

1 reference

12 December 2020

The effect of mating system differences on nucleotide diversity at the phosphoglucose isomerase locus in the plant genus Leavenworthia

1 reference

12 December 2020

TESTING MODELS OF MIGRATION AND ISOLATION AMONG POPULATIONS OF CHINOOK SALMON (ONCORHYNCHUS TSCHAWYTSCHA).

1 reference

12 December 2020

An improved method for estimating the rate of fixation of favorable mutations based on DNA polymorphism data.

1 reference

12 December 2020

Evidence for positive selection in foot-and-mouth disease virus capsid genes from field isolates

1 reference

12 December 2020

Structural and functional differences in the promoter and 5' flanking region of Ldh-B within and between populations of the teleost Fundulus heteroclitus

1 reference

12 December 2020

Detecting non-neutral heterogeneity across a region of DNA sequence in the ratio of polymorphism to divergence

1 reference

12 December 2020

Genetic population structure and gene flow in the Atlantic cod Gadus morhua: a comparison of allozyme and nuclear RFLP loci

1 reference

12 December 2020

The effect of deleterious mutations on neutral molecular variation

1 reference

12 December 2020

Twenty-five years ago in Genetics: electrophoresis in the development of evolutionary genetics: milestone or millstone?

1 reference

12 December 2020

The neutralist, the fly and the selectionist

1 reference

12 December 2020

Evolutionary history of the sex-peptide (Acp70A) gene region in Drosophila melanogaster.

1 reference

12 December 2020

Rapid evolution of a primate sperm protein: relaxation of functional constraint or positive Darwinian selection?

1 reference

12 December 2020

Joint effects of genetic hitchhiking and background selection on neutral variation

1 reference

12 December 2020

Mutation and evolution of microsatellites in Drosophila melanogaster

1 reference

12 December 2020

Positive selection for colicin diversity in bacteria

1 reference

12 December 2020

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

1 reference

12 December 2020

teosinte branched1 and the origin of maize: evidence for epistasis and the evolution of dominance

1 reference

12 December 2020

Coordinated amino acid changes in the evolution of mammalian defensins

1 reference

12 December 2020

Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms

1 reference

12 December 2020

Perspective: From mutants to mechanisms? Assessing the candidate gene paradigm in evolutionary biology.

1 reference

12 December 2020

10.1046/J.1365-294X.2002.01536.X

Identifiers

DOI

1 reference

4 August 2017

0 references

1 reference