Structural genomics of proteins from conserved biochemical pathways and processes (Q34749965)

4 August 2017

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title

Structural genomics of proteins from conserved biochemical pathways and processes (English)

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4 August 2017

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Stephen K Burley

1

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4 August 2017

Jeffrey B Bonanno

series ordinal

2

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4 August 2017

publication date

1 June 2002

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Current Opinion in Structural Biology

4 August 2017

published in

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4 August 2017

volume

12

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4 August 2017

issue

3

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4 August 2017

page(s)

383-391

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Genetics, genomics, and drug discovery.

4 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Protein therapeutics: promises and challenges for the 21st century

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Comparing function and structure between entire proteomes

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Completeness in structural genomics.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Structural genomics programs at the US National Institute of General Medical Sciences

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Global Efforts in Structural Genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

An overview of structural genomics.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

X-ray diffraction studies on enzymes in the glycolytic pathway

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Combining structural genomics and enzymology: completing the picture in metabolic pathways and enzyme active sites

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Determination of protein function, evolution and interactions by structural genomics.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

CATH--a hierarchic classification of protein domain structures

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

The CATH Database provides insights into protein structure/function relationships.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

A database and tools for 3-D protein structure comparison and alignment using the Combinatorial Extension (CE) algorithm.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

A database of protein structure families with common folding motifs

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Touring protein fold space with Dali/FSSP

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

SCOP: a structural classification of proteins database for the investigation of sequences and structures

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

SCOP database in 2002: refinements accommodate structural genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Hidden Markov models in computational biology. Applications to protein modeling

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

1 reference

7 January 2021

Gene3D: structural assignment for whole genes and genomes using the CATH domain structure database

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

The CATH extended protein-family database: providing structural annotations for genome sequences.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

SUPFAM--a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Hidden Markov models for detecting remote protein homologies

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Pfam: a comprehensive database of protein domain families based on seed alignments

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

The Pfam protein families database

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

PROSITE: a dictionary of sites and patterns in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

The PROSITE database, its status in 2002

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Recent improvements to the SMART domain-based sequence annotation resource

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Increased coverage of protein families with the blocks database servers

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

CDD: a database of conserved domain alignments with links to domain three-dimensional structure

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

CKAAPs DB: a conserved key amino acid positions database.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Conserved key amino acid positions (CKAAPs) derived from the analysis of common substructures in proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

CKAAPs DB: a Conserved Key Amino Acid Positions DataBase

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Structural genomics of enzymes involved in sterol/isoprenoid biosynthesis

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Protein structure comparison by alignment of distance matrices

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

MODBASE, a database of annotated comparative protein structure models

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Convergent evolution of similar enzymatic function on different protein folds: the hexokinase, ribokinase, and galactokinase families of sugar kinases

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Structure and mechanism of homoserine kinase: prototype for the GHMP kinase superfamily

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Structural basis for the catalysis and substrate specificity of homoserine kinase

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

On the Evolution of Biochemical Syntheses

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Biosynthesis of isoprenoids via mevalonate in Archaea: the lost pathway

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

The role of lateral gene transfer in the evolution of isoprenoid biosynthesis pathways.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Identification, evolution, and essentiality of the mevalonate pathway for isopentenyl diphosphate biosynthesis in gram-positive cocci

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

An unusual isopentenyl diphosphate isomerase found in the mevalonate pathway gene cluster from Streptomyces sp. strain CL190

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Studies on the nonmevalonate terpene biosynthetic pathway: metabolic role of IspH (LytB) protein

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Crystal structure of isopentenyl diphosphate:dimethylallyl diphosphate isomerase

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Eubacterial diterpene cyclase genes essential for production of the isoprenoid antibiotic terpentecin

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Biosynthesis of napyradiomycins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Biosynthesis of terpenoids: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase from tomato

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Deoxyxylulose phosphate pathway to terpenoids

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Selfish operons and speciation by gene transfer

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Reconciling the many faces of lateral gene transfer.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Comparative protein structure modeling of genes and genomes

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Analysis and assessment of comparative modeling predictions in CASP4.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Structure of the Methanococcus jannaschii mevalonate kinase, a member of the GHMP kinase superfamily

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Organization of the mevalonate kinase (MVK) gene and identification of novel mutations causing mevalonic aciduria and hyperimmunoglobulinaemia D and periodic fever syndrome

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Molecular analysis of MVK mutations and enzymatic activity in hyper-IgD and periodic fever syndrome

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

ModBase: a database of comparative protein structure models.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Crystal structure of 1-deoxy-D-xylulose-5-phosphate reductoisomerase, a crucial enzyme in the non-mevalonate pathway of isoprenoid biosynthesis

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Structure of 4-diphosphocytidyl-2-C- methylerythritol synthetase involved in mevalonate- independent isoprenoid biosynthesis

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Structure and mechanism of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. An enzyme in the mevalonate-independent isoprenoid biosynthetic pathway

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Structure of 2C-methyl-d-erythritol-2,4-cyclodiphosphate synthase involved in mevalonate-independent biosynthesis of isoprenoids

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Evidence of a role for LytB in the nonmevalonate pathway of isoprenoid biosynthesis

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

LytB, a novel gene of the 2-C-methyl-D-erythritol 4-phosphate pathway of isoprenoid biosynthesis in Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Identification of gcpE as a novel gene of the 2-C-methyl-D-erythritol 4-phosphate pathway for isoprenoid biosynthesis in Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

GcpE is involved in the 2-C-methyl-D-erythritol 4-phosphate pathway of isoprenoid biosynthesis in Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

The lytB gene of Escherichia coli is essential and specifies a product needed for isoprenoid biosynthesis.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Studies on the nonmevalonate pathway to terpenes: the role of the GcpE (IspG) protein

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Crystal structure of Pseudomonas mevalonii HMG-CoA reductase at 3.0 angstrom resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Substrate-induced closure of the flap domain in the ternary complex structures provides insights into the mechanism of catalysis by 3-hydroxy-3-methylglutaryl-CoA reductase

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Crystal structure of the catalytic portion of human HMG-CoA reductase: insights into regulation of activity and catalysis

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Structural mechanism for statin inhibition of HMG-CoA reductase

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

The structure of the catalytic portion of human HMG-CoA reductase

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Crystal structure of MJ1247 protein from M. jannaschii at 2.0 A resolution infers a molecular function of 3-hexulose-6-phosphate isomerase

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

Determination of macromolecular structures from anomalous diffraction of synchrotron radiation

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900330-5

7 January 2021

10.1016/S0959-440X(02)00330-5

Identifiers

DOI

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4 August 2017

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