Assessment of major and minor groove DNA interactions by the zinc fingers of Xenopus transcription factor IIIA (Q34602565)

3 August 2017

title

Assessment of major and minor groove DNA interactions by the zinc fingers of Xenopus transcription factor IIIA (English)

1 reference

3 August 2017

4

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3 August 2017

S J McBryant

1

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3 August 2017

B Gedulin

series ordinal

2

1 reference

3 August 2017

K R Clemens

series ordinal

3

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3 August 2017

J M Gottesfeld

series ordinal

5

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3 August 2017

language of work or name

English

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publication date

1 July 1996

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3 August 2017

number of pages

8

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inferred from page(s)

published in

Nucleic Acids Research

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3 August 2017

volume

24

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3 August 2017

issue

13

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3 August 2017

page(s)

2567-2574

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The function of individual zinc fingers in sequence-specific DNA recognition by transcription factor IIIA.

3 August 2017

cites work

1 reference

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Crystal structure of a five-finger GLI-DNA complex: new perspectives on zinc fingers

7 July 2018

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Zinc finger phage: affinity selection of fingers with new DNA-binding specificities

7 July 2018

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The crystal structure of a two zinc-finger peptide reveals an extension to the rules for zinc-finger/DNA recognition

7 July 2018

1 reference

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In vitro selection of zinc fingers with altered DNA-binding specificity

7 July 2018

1 reference

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Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions

7 July 2018

1 reference

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Toward a code for the interactions of zinc fingers with DNA: selection of randomized fingers displayed on phage

7 July 2018

1 reference

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Building zinc fingers by selection: toward a therapeutic application

7 July 2018

1 reference

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A control region in the center of the 5S RNA gene directs specific initiation of transcription: II. The 3' border of the region

7 July 2018

1 reference

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A control region in the center of the 5S RNA gene directs specific initiation of transcription: I. The 5' border of the region

7 July 2018

1 reference

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Xenopus 5S gene transcription factor, TFIIIA: Characterization of a cDNA clone and measurement of RNA levels throughout development

7 July 2018

1 reference

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Specific interaction of a purified transcription factor with an internal control region of 5S RNA genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145982

Repetitive zinc-binding domains in the protein transcription factor IIIA from Xenopus oocytes

7 July 2018

1 reference

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The 5S gene internal control region is composed of three distinct sequence elements, organized as two functional domains with variable spacing

7 July 2018

1 reference

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Functional domains of the Xenopus laevis 5S gene promoter

7 July 2018

1 reference

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Mapping functional regions of transcription factor TFIIIA.

7 July 2018

1 reference

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Three-dimensional solution structure of a single zinc finger DNA-binding domain

7 July 2018

1 reference

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High-resolution three-dimensional structure of a single zinc finger from a human enhancer binding protein in solution

7 July 2018

1 reference

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Characterization of the equilibrium binding of Xenopus transcription factor IIIA to the 5 S RNA gene

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145982

Differences and similarities in DNA-binding preferences of MyoD and E2A protein complexes revealed by binding site selection

7 July 2018

1 reference

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Mode of interaction of the zinc finger protein TFIIIA with a 5S RNA gene of Xenopus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145982

Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145982

Sequence-specific binding of the N-terminal three-finger fragment of Xenopus transcription factor IIIA to the internal control region of a 5S RNA gene

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145982

Mutations in 5S DNA and 5S RNA have different effects on the binding of Xenopus transcription factor IIIA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145982

TFIID binds in the minor groove of the TATA box

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145982

Sequence-specific interaction of the Salmonella Hin recombinase in both major and minor grooves of DNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145982

Specific interaction of the first three zinc fingers of TFIIIA with the internal control region of the Xenopus 5 S RNA gene.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145982

Definition of the binding sites of individual zinc fingers in the transcription factor IIIA-5S RNA gene complex

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145982

Determination of the base recognition positions of zinc fingers from sequence analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145982

Locations of contacts between individual zinc fingers of Xenopus laevis transcription factor IIIA and the internal control region of a 5S RNA gene.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145982

Molecular basis for specific recognition of both RNA and DNA by a zinc finger protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145982

Relative Contributions of the Zinc Fingers of Transcription Factor IIIA to the Energetics of DNA Binding

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145982

Alternating zinc finger motifs in the male-associated protein ZFY: defining architectural rules by mutagenesis and design of an "aromatic swap" second-site revertant

26 October 2018

1 reference

12 December 2020

ADR1a, a zinc finger peptide, exists in two folded conformations

1 reference

12 December 2020

Structure of the TFIIIA-5 S DNA complex

1 reference

12 December 2020

Contribution of individual base pairs to the interaction of TFIIIA with the Xenopus 5S RNA gene

1 reference

12 December 2020

Association of a 5S gene transcription factor with 5S RNA and altered levels of the factor during cell differentiation

1 reference

12 December 2020

Contact points between a positive transcription factor and the Xenopus 5S RNA gene

1 reference

12 December 2020

Domains of the positive transcription factor specific for the Xenopus 5S RNA gene

1 reference

12 December 2020

Mapping of the sites of protection on a 5 S RNA gene by the Xenopus transcription factor IIIA. A model for the interaction

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/24.13.2567

1 reference

journals/nar/McBryantGCWG96

3 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

3 August 2017

1 reference