Physically realistic homology models built with ROSETTA can be more accurate than their templates (Q34600150)

3 August 2017

title

Physically realistic homology models built with ROSETTA can be more accurate than their templates (English)

1 reference

3 August 2017

David Baker

5

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author name string

Kira M S Misura

1

1 reference

3 August 2017

Dylan Chivian

2

1 reference

3 August 2017

Carol A Rohl

3

1 reference

3 August 2017

David E Kim

4

1 reference

3 August 2017

language of work or name

English

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publication date

27 March 2006

1 reference

Proceedings of the National Academy of Sciences of the United States of America

3 August 2017

number of pages

6

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based on heuristic

inferred from page(s)

published in

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3 August 2017

volume

103

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3 August 2017

issue

14

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3 August 2017

page(s)

5361-5366

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Toward high-resolution de novo structure prediction for small proteins.

3 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459360

All are not equal: a benchmark of different homology modeling programs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459360

Progress and challenges in high-resolution refinement of protein structure models.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459360

Modeling structurally variable regions in homologous proteins with rosetta.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459360

Comparison of proteins based on segments structural similarity.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459360

Protein structure prediction using Rosetta

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459360

Modeller: generation and refinement of homology-based protein structure models

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459360

Automated prediction of CASP-5 structures using the Robetta server.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459360

CASP5 assessment of fold recognition target predictions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459360

Assessment of homology-based predictions in CASP5.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459360

Structure validation by Calpha geometry: phi,psi and Cbeta deviation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459360

Improving the performance of Rosetta using multiple sequence alignment information and global measures of hydrophobic core formation.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459360

Comparative protein structure modeling of genes and genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459360

Clustering of low-energy conformations near the native structures of small proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459360

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459360

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459360

Errors in protein structures

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459360

The relation between the divergence of sequence and structure in proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459360

Analysis and assessment of comparative modeling predictions in CASP4.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459360

Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16567638

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

PROCHECK: a program to check the stereochemical quality of protein structures

1 reference

9 October 2024

https://opencitations.net/index/api/v1/references/10.1073/PNAS.0509355103

Identifiers

DOI

10.1073/PNAS.0509355103

1 reference

3 August 2017

0 references

1 reference

3 August 2017

1 reference