Prevalent role of gene features in determining evolutionary fates of whole-genome duplication duplicated genes in flowering plants. (Q34581916)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23396833%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

title

Prevalent role of gene features in determining evolutionary fates of whole-genome duplication duplicated genes in flowering plants (English)

1 reference

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23 February 2020

main subject

whole genome duplication

1 reference

inferred from title

whole genome sequencing

1 reference

3

1 reference

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23 February 2020

author name string

Wen-kai Jiang

series ordinal

1

1 reference

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23 February 2020

Yun-long Liu

series ordinal

2

1 reference

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23 February 2020

Li-zhi Gao

series ordinal

4

1 reference

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23 February 2020

language of work or name

English

0 references

publication date

8 February 2013

1 reference

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23 February 2020

number of pages

18

1 reference

inferred from page(s)

published in

Plant Physiology

1 reference

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23 February 2020

volume

161

1 reference

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23 February 2020

issue

4

1 reference

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23 February 2020

page(s)

1844-1861

1 reference

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Creative Commons Attribution 4.0 International

23 February 2020

copyright license

start time

25 January 2021

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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27 October 2018

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27 October 2018

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27 October 2018

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27 October 2018

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Expansion and diversification of the Populus R2R3-MYB family of transcription factors

27 October 2018

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27 October 2018

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Evolutionary genetics of genome merger and doubling in plants

27 October 2018

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The evolutionary relationship between gene duplication and alternative splicing

27 October 2018

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Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years

27 October 2018

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Preferential subfunctionalization of slow-evolving genes after allopolyploidization in Xenopus laevis

27 October 2018

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The preferential retention of starch synthesis genes reveals the impact of whole-genome duplication on grass evolution

27 October 2018

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Protein under-wrapping causes dosage sensitivity and decreases gene duplicability

27 October 2018

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27 October 2018

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All duplicates are not equal: the difference between small-scale and genome duplication

27 October 2018

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Increased glycolytic flux as an outcome of whole-genome duplication in yeast

27 October 2018

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Gene essentiality, gene duplicability and protein connectivity in human and mouse

27 October 2018

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The (in)dependence of alternative splicing and gene duplication

27 October 2018

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27 October 2018

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27 October 2018

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Functional analysis of gene duplications in Saccharomyces cerevisiae

27 October 2018

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Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

27 October 2018

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Selection for more of the same product as a force to enhance concerted evolution of duplicated genes

27 October 2018

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Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon

27 October 2018

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The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

27 October 2018

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27 October 2018

1 reference

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Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity

27 October 2018

1 reference

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Gene loss and evolutionary rates following whole-genome duplication in teleost fishes

27 October 2018

1 reference

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Widespread genome duplications throughout the history of flowering plants

27 October 2018

1 reference

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27 October 2018

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Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication

27 October 2018

1 reference

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Patterns of sequence loss and cytosine methylation within a population of newly resynthesized Brassica napus allopolyploids

27 October 2018

1 reference

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Evolution of alternative splicing after gene duplication

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613460

Two rounds of whole genome duplication in the ancestral vertebrate

27 October 2018

1 reference

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Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

27 October 2018

1 reference

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Do disparate mechanisms of duplication add similar genes to the genome?

27 October 2018

1 reference

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Ectopic gene conversions increase the G + C content of duplicated yeast and Arabidopsis genes

27 October 2018

1 reference

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A gene expression map of Arabidopsis thaliana development

27 October 2018

1 reference

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27 October 2018

1 reference

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Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae).

27 October 2018

1 reference

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Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

27 October 2018

1 reference

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Close split of sorghum and maize genome progenitors

27 October 2018

1 reference

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Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification

27 October 2018

1 reference

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Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome.

27 October 2018

1 reference

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DAGchainer: a tool for mining segmental genome duplications and synteny

27 October 2018

1 reference

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Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613460

Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics

27 October 2018

1 reference

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Preferential duplication of conserved proteins in eukaryotic genomes

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613460

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

27 October 2018

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affy--analysis of Affymetrix GeneChip data at the probe level

27 October 2018

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27 October 2018

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27 October 2018

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The evolutionary demography of duplicate genes

27 October 2018

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Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

27 October 2018

1 reference

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A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome

27 October 2018

1 reference

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The hidden duplication past of Arabidopsis thaliana

27 October 2018

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Selection in the evolution of gene duplications

27 October 2018

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Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat

27 October 2018

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The origins of genomic duplications in Arabidopsis.

27 October 2018

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Polyploid Incidence and Evolution

27 October 2018

1 reference

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The evolutionary fate and consequences of duplicate genes

27 October 2018

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Comparative genomics of plant chromosomes

27 October 2018

1 reference

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Extensive duplication and reshuffling in the Arabidopsis genome

27 October 2018

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Gene ontology: tool for the unification of biology

27 October 2018

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Genome evolution in polyploids

27 October 2018

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27 October 2018

12 December 2020

The probability of duplicate gene preservation by subfunctionalization

1 reference

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Yeast genome evolution in the post-genome era.

27 October 2018

1 reference

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Preservation of duplicate genes by complementary, degenerative mutations

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613460

Genetic redundancy in vertebrates: polyploidy and persistence of genes encoding multidomain proteins

27 October 2018

1 reference

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PAML: a program package for phylogenetic analysis by maximum likelihood

27 October 2018

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

27 October 2018

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613460

How often do duplicated genes evolve new functions?

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613460

Fixation of a deleterious allele at one of two "duplicate" loci by mutation pressure and random drift

27 October 2018

1 reference

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Preferential duplication in the sparse part of yeast protein interaction network

27 October 2018

1 reference

12 December 2020

Higher duplicability of less important genes in yeast genomes

1 reference

12 December 2020

Alternative splicing and gene duplication are inversely correlated evolutionary mechanisms

1 reference

12 December 2020

The evolutionary position of subfunctionalization, downgraded

1 reference

12 December 2020

Protein Function, Connectivity, and Duplicability in Yeast

1 reference

12 December 2020

Gene complexity and gene duplicability

1 reference

12 December 2020

Very low gene duplication rate in the yeast genome

1 reference

12 December 2020

Identifiers

DOI

10.1104/PP.112.200147

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23396833%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

PMC publication ID

3613460

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23396833%20AND%20SRC:MED&resulttype=core&format=json