InterPro in 2017-beyond protein family and domain annotations (Q34546171)

2 August 2017

title

InterPro in 2017-beyond protein family and domain annotations (English)

1 reference

2 August 2017

1 reference

4

1 reference

2 August 2017

16

1 reference

2 August 2017

21

1 reference

2 August 2017

5

Peer Bork

0 references

Aron Marchler-Bauer

19

Aron Marchler-Bauer

0 references

Lorna Richardson

Lorna Richardson

32

0 references

Damiano Piovesan

Damiano Piovesan

28

0 references

Nicole Redaschi

Nicole Redaschi

31

0 references

Alan J Bridge

Alan J Bridge

6

0 references

Gemma L. Holliday

Gemma L Holliday

13

0 references

Terri Attwood

Teresa K Attwood

2

0 references

Sebastien Pesseat

Sebastien Pesseat

27

0 references

Sara El-Gebali

Sara El-Gebali

9

0 references

Catherine Rivoire

Catherine Rivoire

33

0 references

Alex Mitchell

Alex L Mitchell

47

0 references

Rodrigo López

17

Rodrigo Lopez

1 reference

2 August 2017

3

Patricia C Babbitt

1 reference

2 August 2017

Simon C Potter

29

0 references

Xiaosong Huang

Xiaosong Huang

15

0 references

Ian Sillitoe

36

Ian Sillitoe

1 reference

2 August 2017

25

Christine A Orengo

1 reference

2 August 2017

Paul D Thomas

41

0 references

Julian Gough

11

Julian Gough

1 reference

2 August 2017

Christian J A Sigrist

35

Christian Sigrist

1 reference

2 August 2017

Amaia Sangrador-Vegas

34

Amaia Sangrador-Vegas

1 reference

2 August 2017

44

Ioannis Xenarios

1 reference

2 August 2017

43

Cathy H Wu

1 reference

2 August 2017

22

Darren A Natale

1 reference

2 August 2017

1

Robert D Finn

1 reference

2 August 2017

12

David Haft

1 reference

2 August 2017

14

Hongzhan Huang

1 reference

2 August 2017

23

Marco Necci

1 reference

2 August 2017

24

Gift Nuka

1 reference

2 August 2017

30

Neil D Rawlings

1 reference

2 August 2017

40

Narmada Thanki

1 reference

2 August 2017

42

Silvio C E Tosatto

1 reference

2 August 2017

39

Granger Sutton

1 reference

2 August 2017

45

Lai-Su Yeh

1 reference

2 August 2017

Hsin-Yu Chang

7

1 reference

2 August 2017

Zsuzsanna Dosztányi

8

1 reference

2 August 2017

Matthew Fraser

10

1 reference

2 August 2017

Shennan Lu

18

1 reference

2 August 2017

Huaiyu Mi

20

1 reference

2 August 2017

Youngmi Park

26

1 reference

2 August 2017

Ben Smithers

37

1 reference

2 August 2017

Silvano Squizzato

38

1 reference

2 August 2017

Siew-Yit Young

46

1 reference

2 August 2017

language of work or name

English

0 references

publication date

29 November 2016

1 reference

2 August 2017

published in

Nucleic Acids Research

1 reference

2 August 2017

volume

45

1 reference

2 August 2017

issue

D1

1 reference

2 August 2017

page(s)

D190-D199

1 reference

Creative Commons Attribution 4.0 International

2 August 2017

copyright license

start time

30 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Large-scale analysis of intrinsic disorder flavors and associated functions in the protein sequence universe

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The Ensembl gene annotation system

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Candidate gene prioritization with Endeavour.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

GO annotation in InterPro: why stability does not indicate accuracy in a sea of changing annotations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The Pfam protein families database: towards a more sustainable future

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

EBI metagenomics in 2016--an expanding and evolving resource for the analysis and archiving of metagenomic data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

PANTHER version 10: expanded protein families and functions, and analysis tools.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Gene3D: expanding the utility of domain assignments

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Ensembl Genomes 2016: more genomes, more complexity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

DIDA: A curated and annotated digenic diseases database.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

KEGG as a reference resource for gene and protein annotation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

PhytoPath: an integrative resource for plant pathogen genomics.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

PDBe: improved accessibility of macromolecular structure data from PDB and EMDB

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Intrinsically disordered proteins in cellular signalling and regulation.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The InterPro protein families database: the classification resource after 15 years

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Expanded microbial genome coverage and improved protein family annotation in the COG database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

CDD: NCBI's conserved domain database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The SUPERFAMILY 1.75 database in 2014: a doubling of data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

CATH: comprehensive structural and functional annotations for genome sequences.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

UniProt: a hub for protein information

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

HAMAP in 2015: updates to the protein family classification and annotation system

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

SMART: recent updates, new developments and status in 2015.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Classification of intrinsically disordered regions and proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

InterProScan 5: genome-scale protein function classification

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The Structure-Function Linkage Database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Calpain-6 deficiency promotes skeletal muscle development and regeneration

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

TIGRFAMs and Genome Properties in 2013.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

New and continuing developments at PROSITE.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

UniPathway: a resource for the exploration and annotation of metabolic pathways

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The $1,000 genome, the $100,000 analysis?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

From complete genome sequence to 'complete' understanding?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The National Center for Biotechnology Information's Protein Clusters Database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

High-throughput functional annotation and data mining with the Blast2GO suite

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Data growth and its impact on the SCOP database: new developments

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The ProDom database of protein domain families: more emphasis on 3D

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

PIRSF: family classification system at the Protein Information Resource

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Protein disorder prediction: implications for structural proteomics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

GlobPlot: Exploring protein sequences for globularity and disorder

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Gene ontology: tool for the unification of biology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The ENZYME database in 2000

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

ESpritz: accurate and fast prediction of protein disorder

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

27 October 2018

Identifiers

DOI

10.1093/NAR/GKW1107

1 reference

journals/nar/FinnABBBBCDEFGH17

2 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 August 2017

1 reference