Read length versus depth of coverage for viral quasispecies reconstruction (Q34442752)

2 August 2017

title

Read length versus depth of coverage for viral quasispecies reconstruction (English)

1 reference

2 August 2017

1 reference

2

Martin Däumer

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2 August 2017

4

Niko Beerenwinkel

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Osvaldo Zagordi

object named as

Osvaldo Zagordi

series ordinal

1

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author name string

Christian Beisel

series ordinal

3

1 reference

2 August 2017

language of work or name

English

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publication date

3 October 2012

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2 August 2017

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2 August 2017

volume

7

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2 August 2017

issue

10

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2 August 2017

page(s)

e47046

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Creative Commons Attribution 4.0 International

2 August 2017

copyright license

start time

3 October 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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1 reference

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Contribution of a mutational bias in hepatitis C virus replication to the genetic barrier in the development of drug resistance

6 July 2018

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6 July 2018

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6 July 2018

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Inferring viral quasispecies spectra from 454 pyrosequencing reads.

6 July 2018

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Sequential bottlenecks drive viral evolution in early acute hepatitis C virus infection

6 July 2018

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Dates of HIV infection can be estimated for seroprevalent patients by coalescent analysis of serial next-generation sequencing data

6 July 2018

1 reference

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6 July 2018

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Removing noise from pyrosequenced amplicons

6 July 2018

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Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing

6 July 2018

1 reference

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Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies

6 July 2018

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Covering all bases in HIV research: unveiling a hidden world of viral evolution.

6 July 2018

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Sequencing technologies - the next generation

6 July 2018

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Evaluation of next generation sequencing platforms for population targeted sequencing studies

6 July 2018

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Use of massively parallel ultradeep pyrosequencing to characterize the genetic diversity of hepatitis B virus in drug-resistant and drug-naive patients and to detect minor variants in reverse transcriptase and hepatitis B S antigen

6 July 2018

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6 July 2018

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Viral population estimation using pyrosequencing

6 July 2018

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Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistance

6 July 2018

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DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3463535

Genome sequencing in microfabricated high-density picolitre reactors

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3463535

Reliable detection of subclonal single-nucleotide variants in tumour cell populations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3463535

Minor Variant Detection in Amplicons using 454 Massive Parallel Pyrosequencing: Experiences and Considerations for Successful Applications

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3463535

Use of massive parallel pyrosequencing for near full-length characterization of a unique HIV Type 1 BF recombinant associated with a fatal primary infection

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3463535

Population sequencing using short reads: HIV as a case study.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3463535

Deep sequencing of a genetically heterogeneous sample: local haplotype reconstruction and read error correction

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23056573

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0047046

1 reference

2 August 2017

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1 reference

2 August 2017

1 reference