High-density SNP genotyping of tomato (Solanum lycopersicum L.) reveals patterns of genetic variation due to breeding. (Q34429280)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23029069%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

title

High-density SNP genotyping of tomato (Solanum lycopersicum L.) reveals patterns of genetic variation due to breeding (English)

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9 March 2020

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11

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9 March 2020

author name string

Sung-Chur Sim

1

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9 March 2020

Allen Van Deynze

2

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9 March 2020

Kevin Stoffel

3

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9 March 2020

David S Douches

4

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9 March 2020

Daniel Zarka

5

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Martin W Ganal

6

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Roger T Chetelat

7

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Samuel F Hutton

8

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John W Scott

9

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Randolph G Gardner

10

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Martha Mutschler

12

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9 March 2020

James R Myers

13

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David M Francis

14

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language of work or name

English

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publication date

20 September 2012

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9 March 2020

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9 March 2020

volume

7

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issue

9

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9 March 2020

page(s)

e45520

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Creative Commons Attribution 4.0 International

9 March 2020

copyright license

start time

20 September 2012

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

ggplot2

object named as

R package ggplot2

2 references

10 June 2022

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=3447764

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L.) reveals patterns of SNP variation associated with breeding

6 July 2018

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EST, COSII, and arbitrary gene markers give similar estimates of nucleotide diversity in cultivated tomato (Solanum lycopersicum L.).

6 July 2018

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A clarified position for Solanum lycopersicum var. cerasiforme in the evolutionary history of tomatoes (solanaceae).

6 July 2018

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6 July 2018

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6 July 2018

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Regulatory change in YABBY-like transcription factor led to evolution of extreme fruit size during tomato domestication

6 July 2018

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6 July 2018

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Diversity and linkage disequilibrium analysis within a selected set of cultivated tomatoes

6 July 2018

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6 July 2018

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6 July 2018

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Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars

6 July 2018

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Fine mapping of the tomato I-3 gene for fusarium wilt resistance and elimination of a co-segregating resistance gene analogue as a candidate for I-3.

6 July 2018

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Cloning and characterization of the durable tomato mosaic virus resistance gene Tm-2(2) from Lycopersicon esculentum

6 July 2018

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Localization of jointless-2 gene in the centromeric region of tomato chromosome 12 based on high resolution genetic and physical mapping

6 July 2018

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Structure of linkage disequilibrium in plants

6 July 2018

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A new class of regulatory genes underlying the cause of pear-shaped tomato fruit

6 July 2018

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Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing

6 July 2018

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6 July 2018

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Tomato Ve disease resistance genes encode cell surface-like receptors

6 July 2018

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An alternative pathway to beta -carotene formation in plant chromoplasts discovered by map-based cloning of beta and old-gold color mutations in tomato

6 July 2018

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Inference of population structure using multilocus genotype data

6 July 2018

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The root knot nematode resistance gene Mi from tomato is a member of the leucine zipper, nucleotide binding, leucine-rich repeat family of plant genes

6 July 2018

1 reference

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Dissection of the fusarium I2 gene cluster in tomato reveals six homologs and one active gene copy

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

The SELF-PRUNING gene of tomato regulates vegetative to reproductive switching of sympodial meristems and is the ortholog of CEN and TFL1.

6 July 2018

1 reference

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Seed Banks and Molecular Maps: Unlocking Genetic Potential from the Wild

6 July 2018

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Map-based cloning of a protein kinase gene conferring disease resistance in tomato

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

Construction of a genetic linkage map in man using restriction fragment length polymorphisms

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

Cloning and characterization of a gene involved in phytoene synthesis from tomato

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

The Nonconcept of Species Diversity: A Critique and Alternative Parameters

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

ESTIMATING F-STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L.) Skeels] endemic to Morocco

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

Genealogy and fine mapping of obscuravenosa, a gene affecting the distribution of chloroplasts in leaf veins, and evidence of selection during breeding of tomatoes (Lycopersicon esculentum; Solanaceae)

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

Characterization of hypersensitive resistance to bacterial spot race T3 (Xanthomonas perforans) from tomato accession PI 128216

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

Resistance in Lycopersicon esculentum Intraspecific Crosses to Race T1 Strains of Xanthomonas campestris pv. vesicatoria Causing Bacterial Spot of Tomato

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

Two Loci from Lycopersicon hirsutum LA407 Confer Resistance to Strains of Clavibacter michiganensis subsp. michiganensis.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

AtMYB12 regulates caffeoyl quinic acid and flavonol synthesis in tomato: expression in fruit results in very high levels of both types of polyphenol

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

Amino acid substitutions in homologs of the STAY-GREEN protein are responsible for the green-flesh and chlorophyll retainer mutations of tomato and pepper.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

Whole-genome genotyping with the single-base extension assay

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

Evaluation of AFLPs for germplasm fingerprinting and assessment of genetic diversity in cultivars of tomato (Lycopersicon esculentum L.).

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

In silico screening of a saturated mutation library of tomato

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

The SELF-PRUNING gene family in tomato

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

Mapping quantitative trait loci in inbred backcross lines of Lycopersicon pimpinellifolium (LA1589).

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

JOINTLESS is a MADS-box gene controlling tomato flower abscission zone development

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

fw2.2: a quantitative trait locus key to the evolution of tomato fruit size

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

The tomato Cf-2 disease resistance locus comprises two functional genes encoding leucine-rich repeat proteins

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield-associated QTL.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447764

Phenetic relationships and levels of variability detected by restriction fragment length polymorphism and random amplified polymorphic DNA analysis of cultivated and wild accessions of Lycopersicon esculentum

27 October 2018

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12 December 2020

Increase in tomato locule number is controlled by two single-nucleotide polymorphisms located near WUSCHEL

1 reference

12 December 2020

IMMUNITY TO FUSARIUM WILT IN THE TOMATO

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12 December 2020

Variances and covariances of squared linkage disequilibria in finite populations

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12 December 2020

10.1371/JOURNAL.PONE.0045520

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23029069%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23029069%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

PubMed publication ID

23029069

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23029069%20AND%20SRC:MED&resulttype=core&format=json