Structural insights into translational fidelity (Q34426043)

2 August 2017

1 reference

title

Structural insights into translational fidelity (English)

1 reference

2 August 2017

author

Venkatraman Ramakrishnan

series ordinal

2

1 reference

2 August 2017

James M Ogle

1

1 reference

2 August 2017

publication date

1 January 2005

1 reference

Annual Review of Biochemistry

2 August 2017

number of pages

49

1 reference

based on heuristic

inferred from page(s)

published in

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2 August 2017

volume

74

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2 August 2017

page(s)

129-177

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Purine bases at position 37 of tRNA stabilize codon-anticodon interaction in the ribosomal A site by stacking and Mg2+-dependent interactions

2 August 2017

cites work

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Uniform binding of aminoacyl-tRNAs to elongation factor Tu by thermodynamic compensation

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The elongation phase of protein synthesis

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9 October 2022

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The ternary complex of aminoacylated tRNA and EF-Tu-GTP. Recognition of a bond and a fold

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Genetic and comparative analyses reveal an alternative secondary structure in the region of nt 912 of Escherichia coli 16S rRNA

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Structure of the 30S ribosomal subunit

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Crystallographic studies on the ribosome, a large macromolecular assembly exhibiting severe nonisomorphism, extreme beam sensitivity and no internal symmetry

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Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution

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EFTu provides an internal kinetic standard for translational accuracy

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9 October 2022

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Phenotypic Masking and Streptomycin Dependence

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9 October 2022

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Context dependence of hydrogen bond free energy revealed by substitutions in an RNA hairpin

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9 October 2022

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Proofreading of the codon-anticodon interaction on ribosomes

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9 October 2022

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Ribosome structure: revisiting the connection between translational accuracy and unconventional decoding

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9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Genetic evidence against the 16S ribosomal RNA helix 27 conformational switch model

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9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Effect of different mutaions in ribosomal protein S5 of Escherichia coli on translational fidelity

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9 October 2022

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Structure of a transcribing T7 RNA polymerase initiation complex

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9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Selection of tRNA by the ribosome requires a transition from an open to a closed form

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9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Paromomycin binding induces a local conformational change in the A-site of 16 S rRNA

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Interaction of antibiotics with functional sites in 16S ribosomal RNA

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Frameshift suppression

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

STREPTOMYCIN, SUPPRESSION, AND THE CODE

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Optimization of translation accuracy

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9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Structure of the A site of Escherichia coli 16S ribosomal RNA complexed with an aminoglycoside antibiotic

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Recognition of cognate transfer RNA by the 30S ribosomal subunit

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

The crystal structure of elongation factor EF-Tu from Thermus aquaticus in the GTP conformation

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Phosphorylation of elongation factor Tu prevents ternary complex formation.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Complex formation between transfer RNA's with complementary anticodons

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Structures of mismatch replication errors observed in a DNA polymerase

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

tRNA tertiary structure in solution as probed by the photochemically induced 8-13 cross-link

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

A single base mutation at position 2661 in E. coli 23S ribosomal RNA affects the binding of ternary complex to the ribosome.

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9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

A twisted tRNA intermediate sets the threshold for decoding

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9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Restriction, de-restriction and mistranslation in missense suppression. Ribosomal discrimination of transfer RNA's

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9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

A 9 A resolution X-ray crystallographic map of the large ribosomal subunit

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Drug dependence reversed by a ribosomal ambiguity mutation, ram, in Escherichia coli

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9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Crystal structure of active elongation factor Tu reveals major domain rearrangements

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9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Crystal structure of an initiation factor bound to the 30S ribosomal subunit

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Thermodynamics of single mismatches in RNA duplexes

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9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Alteration of a 30S Ribosomal Protein Accompanying the ram Mutation in Escherichia coli

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Binding of tRNA to the ribosomal A and P sites protects two distinct sets of nucleotides in 16 S rRNA.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Transfer RNA structure and coding specificity. II. A D-arm tertiary interaction that restricts coding range.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Single-particle electron cryo-microscopy: towards atomic resolution.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

On the accuracy of protein synthesis in Drosophila melanogaster

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu, and a GTP analog

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Effect of photochemical crosslink S4U(8)-C(13) on suppressor activity of su+ tRNATrp from Escherichia coli

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9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Chemical means of information storage and readout in biological systems

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9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Sequence dependence for the energetics of terminal mismatches in ribooligonucleotides

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

THE FREQUENCY OF ERRORS IN PROTEIN BIOSYNTHESIS

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9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Visualization of elongation factor Tu on the Escherichia coli ribosome.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Single-particle imaging of macromolecules by cryo-electron microscopy

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Crystal structure of paromomycin docked into the eubacterial ribosomal decoding A site

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Interaction of helix D of elongation factor Tu with helices 4 and 5 of protein L7/12 on the ribosome

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Major groove binding of the tRNA/mRNA complex to the 16 S ribosomal RNA decoding site

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Luminescence and binding studies on tRNA-Phe

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9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

DNA polymerases: structural diversity and common mechanisms

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9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Mechanisms of EF-Tu, a pioneer GTPase

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9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Editing mechanisms in protein synthesis. Rejection of valine by the isoleucyl-tRNA synthetase

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9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Identification and functional characterization of the protein controlled by the streptomycin-resistant locus in E. coli

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9 October 2022

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On the Structure of Yeast tRNAPhe. Complementary-Oligonucleotide Binding Studies

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9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

The accuracy of protein biosynthesis is limited by its speed: high fidelity selection by ribosomes of aminoacyl-tRNA ternary complexes containing GTP[gamma S].

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Kinetic Proofreading: A New Mechanism for Reducing Errors in Biosynthetic Processes Requiring High Specificity

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Transfer RNA-mediated editing in threonyl-tRNA synthetase. The class II solution to the double discrimination problem

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9 October 2022

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Intact aminoacyl-tRNA is required to trigger GTP hydrolysis by elongation factor Tu on the ribosome

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9 October 2022

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The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

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9 October 2022

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Conformational switch in the decoding region of 16S rRNA during aminoacyl-tRNA selection on the ribosome.

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9 October 2022

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Isoleucyl-tRNA synthetase from bakers' yeast: multistep proofreading in discrimination between isoleucine and valine with modulated accuracy, a scheme for molecular recognition by energy dissipation.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

tRNA structure and ribosomal function. II. Interaction between anticodon helix and other tRNA mutations.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Genetical Implications of the Structure of Deoxyribonucleic Acid

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9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

tRNA structure and ribosomal function. I. tRNA nucleotide 27-43 mutations enhance first position wobble.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Denatured DNA as a direct template for in vitro protein synthesis

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Electrophoretic and immunological studies on ribosomal proteins of 100 Escherichia coli revertants from streptomycin dependence

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Transfer RNA structure and coding specificity. I. Evidence that a D-arm mutation reduces tRNA dissociation from the ribosome.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

tRNA selection and kinetic proofreading in translation

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Energetics of internal GU mismatches in ribooligonucleotide helixes

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

The frequency of errors in protein biosynthesis

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Maintaining the ribosomal reading frame: the influence of the E site during translational regulation of release factor 2.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Frameshift Suppression: a Nucleotide Addition in the Anticodon of a Glycine Transfer RNA

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Tryptophan transfer RNA as the UGA suppressor

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 Å resolution

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Modified nucleoside dependent Watson-Crick and wobble codon binding by tRNALysUUU species

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Kinetic properties of Escherichia coli ribosomes with altered forms of S12

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Codon-dependent conformational change of elongation factor Tu preceding GTP hydrolysis on the ribosome.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

An estimate of the frequency of in vivo transcriptional errors at a nonsense codon in Escherichia coli

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Transient conformational states of aminoacyl-tRNA during ribosome binding catalyzed by elongation factor Tu.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

On the physical basis for ambiguity in genetic coding interactions

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

The frequency of transcriptional and translational errors at nonsense codons in the lacZ gene of Escherichia coli

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Understanding discrimination by the ribosome: stability testing and groove measurement of codon-anticodon pairs

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Characterization and preliminary attempts for derivatization of crystals of large ribosomal subunits from Haloarcula marismortui diffracting to 3 A resolution

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Studies of the complex between transfer RNAs with complementary anticodons. I. Origins of enhanced affinity between complementary triplets

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Refined structure of elongation factor EF-Tu from Escherichia coli

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Comparison of X-ray crystal structure of the 30S subunit-antibiotic complex with NMR structure of decoding site oligonucleotide-paromomycin complex

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Active site tightness and substrate fit in DNA replication

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Decoding the genome: a modified view

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Enzyme structure with two catalytic sites for double-sieve selection of substrate

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Initial binding of the elongation factor Tu.GTP.aminoacyl-tRNA complex preceding codon recognition on the ribosome.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Codon-specific missense errors in vivo.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

The transorientation hypothesis for codon recognition during protein synthesis

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

A ribosomal ambiguity mutation

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Crystal structure of the ribosome at 5.5 A resolution

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Base 2661 in Escherichia coli 23S rRNA influences the binding of elongation factor Tu during protein synthesis in vivo

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

RNA substrate binding site in the catalytic core of the Tetrahymena ribozyme

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

A mutation suppressing streptomycin dependence. I. An effect on ribosome function

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Complex formation between adenine oligonucleotides and polyuridylic acid

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Kinetic determinants of high-fidelity tRNA discrimination on the ribosome

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

X-ray crystal structures of the WT and a hyper-accurate ribosome from Escherichia coli

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Induced fit in initial selection and proofreading of aminoacyl-tRNA on the ribosome

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

STRUCTURE OF A RIBONUCLEIC ACID

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

X-ray crystal structures of 70S ribosome functional complexes

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Efficient replication between non-hydrogen-bonded nucleoside shape analogs

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

A stereospecific mechanism for the aminoacyl-tRNA selection at the ribosome

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Structural Insights into the Origins of DNA Polymerase Fidelity

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Streptomycin interferes with conformational coupling between codon recognition and GTPase activation on the ribosome.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

The role of modifications in codon discrimination by tRNA(Lys)UUU.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Specificity of RNA-RNA helix recognition

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Nucleoside triphosphate regeneration decreases the frequency of translation errors

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Fidelity of aminoacyl-tRNA selection on the ribosome: kinetic and structural mechanisms

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

A universal mode of helix packing in RNA.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Stability of XGCGCp, GCGCYp, and XGCGCYp helixes: an empirical estimate of the energetics of hydrogen bonds in nucleic acids

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Insights into the decoding mechanism from recent ribosome structures

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Free energy contributions of G.U and other terminal mismatches to helix stability

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Complementary Oligonucleotide Binding to the Anticodon Loop of fMet-transfer RNA

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Interactions of a small RNA with antibiotic and RNA ligands of the 30S subunit

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

COMPLEXING ABILITY AND CODING PROPERTIES OF SYNTHETIC POLYNUCLEOTIDES

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

An open and closed case for all polymerases.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Conformational change of elongation factor Tu (EF-Tu) induced by antibiotic binding. Crystal structure of the complex between EF-Tu.GDP and aurodox

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Kinetic amplification of enzyme discrimination

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Structural dynamics of ribosomal RNA during decoding on the ribosome

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Mistranslation in E. coli

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Association of complementary oligoribonucleotides in aqueous solution

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Selective perturbation of G530 of 16 S rRNA by translational miscoding agents and a streptomycin-dependence mutation in protein S12.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Translation of the UGA triplet in vitro by tryptophan transfer RNA's

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Fidelity during translation of the genetic code

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

RNA tertiary interactions in the large ribosomal subunit: the A-minor motif

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Direct measurement of oligonucleotide substrate binding to wild-type and mutant ribozymes from Tetrahymena

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Factor-free ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Characterization of crystals of small ribosomal subunits

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Crystal structure of a Y-family DNA polymerase in action: a mechanism for error-prone and lesion-bypass replication

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Evidence for the double-sieve editing mechanism in protein synthesis. Steric exclusion of isoleucine by valyl-tRNA synthetases

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Mutations in 23 S ribosomal RNA perturb transfer RNA selection and can lead to streptomycin dependence.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Molecular Mechanics of Translation : a Reciprocating Ratchet Mechanism

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Placement of protein and RNA structures into a 5 A-resolution map of the 50S ribosomal subunit

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Comparison of binding of mixed ribose-deoxyribose analogues of CUCU to a ribozyme and to GGAGAA by equilibrium dialysis: evidence for ribozyme specific interactions with 2' OH groups

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Ribosomal Decoding Processes at Codons in the A or P Sites Depend Differently on 2′-OH Groups

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Evaluation of intrinsic binding energy from a hydrogen bonding group in an enzyme inhibitor

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Free-energy dissipation constraints on the accuracy of enzymatic selections

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Streptomycin preferentially perturbs ribosomal proofreading

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Compilation of tRNA sequences and sequences of tRNA genes

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Stability of the messenger RNA-sRNA-ribosome complex

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Structures of two thermolysin-inhibitor complexes that differ by a single hydrogen bond

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Sequence-specific recognition of double helical nucleic acids by proteins

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Mutations in helix 27 of the yeast Saccharomyces cerevisiae 18S rRNA affect the function of the decoding center of the ribosome

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Allosteric mechanism for codon-dependent tRNA selection on ribosomes

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Problems with the transorientation hypothesis

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Involvement of ribosomal protein L7/L12 in control of translational accuracy

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Ribozyme recognition of RNA by tertiary interactions with specific ribose 2′-OH groups

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

PHENOTYPIC REPAIR BY STREPTOMYCIN OF DEFECTIVE GENOTYPES IN E. COLI

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

DNA replication fidelity

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Maintenance of the correct open reading frame by the ribosome

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Primary structures of mutationally altered ribosomal protein L7/L12 and their effects on cellular growth and translational accuracy.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

CODES WITHOUT COMMAS.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Accurate translation of the genetic code depends on tRNA modified nucleosides.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Red Photoreceptor in Butterflies

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

A semi-quantitative treatment of missense and nonsense suppression in the strA and ram ribosomal mutants of Escherichia coli Evaluation of some molecular parameters of translation in vivo

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

A Conformational Switch in Escherichia coli 16 S Ribosomal RNA During Decoding of Messenger RNA

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Recognition of the codon-anticodon helix by ribosomal RNA.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Intermediate states in the movement of transfer RNA in the ribosome

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Structure of a bacterial 30S ribosomal subunit at 5.5 A resolution

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Functional Modification of 16S Ribosomal RNA by Kethoxal

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Dominant lethal mutations in a conserved loop in 16S rRNA.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Structure of yeast phenylalanine tRNA at 3 Å resolution

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Crystal structure of the 30 s ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16 s RNA

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Low Activity of β-Galactosidase in Frameshift Mutants of Escherichia coli

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

A soluble ribonucleic acid intermediate in protein synthesis

1 reference

19 October 2022

https://opencitations.net/index/coci/api/v1/citations/10.1016/S0021-9258(19)77302-5

Ribosome interactions of aminoacyl-tRNA and elongation factor Tu in the codon-recognition complex

1 reference

14 December 2024

https://opencitations.net/index/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Molecular mimicry in protein synthesis?

1 reference

14 December 2024

https://opencitations.net/index/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Growth of bacteriophages MS2 and T7 on streptomycin-resistant mutants of Escherichia coli

1 reference

14 December 2024

https://opencitations.net/index/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Codon-anticodon binding in tRNAphe

1 reference

14 December 2024

https://opencitations.net/index/api/v1/references/10.1146/ANNUREV.BIOCHEM.74.061903.155440

Identifiers

DOI

10.1146/ANNUREV.BIOCHEM.74.061903.155440

1 reference

2 August 2017

1 reference