PredictProtein--an open resource for online prediction of protein structural and functional features (Q34418986)

2 August 2017

title

PredictProtein--an open resource for online prediction of protein structural and functional features (English)

1 reference

2 August 2017

18

Chris Sander

1 reference

2 August 2017

15

Yana Bromberg

0 references

Burkhard Rost

20

Burkhard Rost

1 reference

2 August 2017

14

Avner Schlessinger

0 references

Edda Kloppmann

2

Edda Kloppmann

0 references

Maximilian Hecht

4

Maximilian Hecht

0 references

Guy Yachdav

1

Guy Yachdav

0 references

Peter Hönigschmid

7

Peter Hönigschmid

0 references

Haim Ashkenazy

Haim Ashkenazy

12

0 references

Andrea Schafferhans

Andrea Schafferhans

8

0 references

Nir Ben-Tal

Nir Ben-Tal

19

0 references

Marco Punta

13

Marco Punta

1 reference

2 August 2017

Guy Yachdav

1

1 reference

2 August 2017

Edda Kloppmann

2

1 reference

2 August 2017

Laszlo Kajan

3

1 reference

2 August 2017

Maximilian Hecht

4

1 reference

2 August 2017

Tatyana Goldberg

5

1 reference

2 August 2017

Tobias Hamp

6

1 reference

2 August 2017

Peter Hönigschmid

7

1 reference

2 August 2017

Manfred Roos

9

1 reference

2 August 2017

Michael Bernhofer

10

1 reference

2 August 2017

Lothar Richter

11

1 reference

2 August 2017

Avner Schlessinger

14

1 reference

2 August 2017

Reinhard Schneider

16

1 reference

2 August 2017

Gerrit Vriend

17

1 reference

2 August 2017

language of work or name

English

0 references

publication date

5 May 2014

1 reference

2 August 2017

published in

Nucleic Acids Research

1 reference

2 August 2017

volume

42

1 reference

2 August 2017

issue

Web Server issue

1 reference

2 August 2017

page(s)

W337-43

1 reference

Creative Commons Attribution 3.0 Unported

2 August 2017

copyright license

start time

10 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

HeatMapViewer: interactive display of 2D data in biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

LocTree3 prediction of localization

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Cloud prediction of protein structure and function with PredictProtein for Debian.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

News from the protein mutability landscape

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

FFPred 2.0: improved homology-independent prediction of gene ontology terms for eukaryotic protein sequences.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Homology-based inference sets the bar high for protein function prediction

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

BioJS: an open source JavaScript framework for biological data visualization

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

A large-scale evaluation of computational protein function prediction

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

New and continuing developments at PROSITE.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

LocTree2 predicts localization for all domains of life

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Alternative protein-protein interfaces are frequent exceptions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

The Pfam protein families database

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Defining human ERAD networks through an integrative mapping strategy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

SignalP 4.0: discriminating signal peptides from transmembrane regions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

UniProt Knowledgebase: a hub of integrated protein data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Community-driven computational biology with Debian Linux

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

A series of PDB related databases for everyday needs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Improved sequence-based prediction of disordered regions with multilayer fusion of multiple information sources

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

In silico mutagenesis: a case study of the melanocortin 4 receptor

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

New in protein structure and function annotation: hotspots, single nucleotide polymorphisms and the 'Deep Web'.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Comprehensive characterization of genes required for protein folding in the endoplasmic reticulum

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Improved disorder prediction by combination of orthogonal approaches

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Natively unstructured regions in proteins identified from contact predictions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Natively unstructured loops differ from other loops

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

SNAP: predict effect of non-synonymous polymorphisms on function

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

ISIS: interaction sites identified from sequence.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Improving the accuracy of transmembrane protein topology prediction using evolutionary information

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

DisProt: the Database of Disordered Proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

DISULFIND: a disulfide bonding state and cysteine connectivity prediction server

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

OPM: orientations of proteins in membranes database

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Protein flexibility and rigidity predicted from sequence

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

PROFcon: novel prediction of long-range contacts.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

The PredictProtein server

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

The DISOPRED server for the prediction of protein disorder

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Automatic prediction of protein function

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

NORSp: Predictions of long regions without regular secondary structure

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Review: protein secondary structure prediction continues to rise.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Gene ontology: tool for the unification of biology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

6 July 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Protein secondary structure prediction based on position-specific scoring matrices

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Analysis of compositionally biased regions in sequence databases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

PHD: predicting one-dimensional protein structure by profile-based neural networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Progress of 1D protein structure prediction at last

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Prediction of protein secondary structure at better than 70% accuracy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Basic local alignment search tool

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Predicting coiled coils from protein sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086098

Critical assessment of methods of protein structure prediction - Round VIII.

6 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU366

Swiss-Prot: juggling between evolution and stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU366

ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU366

An HMM posterior decoder for sequence feature prediction that includes homology information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU366

Loopy proteins appear conserved in evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU366

Comparison of site-specific rate-inference methods for protein sequences: empirical Bayesian methods are superior

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU366

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU366

Transmembrane protein 85 from both human (TMEM85) and yeast (YGL231c) inhibit hydrogen peroxide mediated cell death in yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU366

Alignments grow, secondary structure prediction improves

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24799431

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

PROFbval: predict flexible and rigid residues in proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24799431

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKU366

1 reference

journals/nar/YachdavKKHGHHSRBRAPSB0VSBR14

2 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 August 2017

1 reference