Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton (Q34329310)

1 August 2017

title

Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton (English)

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1 August 2017

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2

Jonathan F Wendel

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1 August 2017

Lex E Flagel

1

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1 August 2017

Joshua A Udall

series ordinal

3

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1 August 2017

language of work or name

English

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publication date

6 July 2012

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1 August 2017

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1 August 2017

volume

13

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1 August 2017

page(s)

302

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Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication

1 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

The Sequence Alignment/Map format and SAMtools

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

Fast and accurate short read alignment with Burrows-Wheeler transform

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

Genomic expression dominance in allopolyploids

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (gossypium)

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

Turning a hobby into a job: how duplicated genes find new functions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

Pentatricopeptide repeat proteins: a socket set for organelle gene expression.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

InterPro: the integrative protein signature database

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

Spotted cotton oligonucleotide microarrays for gene expression analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

Accumulation of genome-specific transcripts, transcription factors and phytohormonal regulators during early stages of fiber cell development in allotetraploid cotton

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

A novel approach for characterizing expression levels of genes duplicated by polyploidy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

A global assembly of cotton ESTs.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

Expression profiling identifies genes expressed early during lint fibre initiation in cotton

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

Incongruent patterns of local and global genome size evolution in cotton

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

The Bioperl toolkit: Perl modules for the life sciences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

Functional genomics of cell elongation in developing cotton fibers

6 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-302

Global analysis of gene expression in cotton fibers from wild and domesticated Gossypium barbadense

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-302

Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-302

Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-302

Rate variation among nuclear genes and the age of polyploidy in Gossypium

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-302

Homoeologous nonreciprocal recombination in polyploid cotton

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-302

DNA sequence quality trimming and vector removal

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-302

A majority of cotton genes are expressed in single-celled fiber

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427041

27 October 2018

Identifiers

DOI

10.1186/1471-2164-13-302

1 reference

1 August 2017

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1 August 2017

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