The global transcriptional regulatory network for metabolism in Escherichia coli exhibits few dominant functional states. (Q34244913)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16357206%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

title

The global transcriptional regulatory network for metabolism in Escherichia coli exhibits few dominant functional states (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16357206%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

0 references

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16357206%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

4

Bernhard O Palsson

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16357206%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

author name string

Christian L Barrett

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16357206%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

Christopher D Herring

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16357206%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

language of work or name

English

0 references

publication date

15 December 2005

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16357206%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

10 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16357206%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

volume

102

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16357206%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

issue

52

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16357206%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

page(s)

19103-19108

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16357206%20AND%20SRC:MED&resulttype=core&format=json

Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states

10 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323155

Identification of the CRP regulon using in vitro and in vivo transcriptional profiling

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323155

Integrated analysis of metabolic phenotypes in Saccharomyces cerevisiae

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323155

Integrating high-throughput and computational data elucidates bacterial networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323155

Probing the ArcA-P modulon of Escherichia coli by whole genome transcriptional analysis and sequence recognition profiling.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323155

Identifying global regulators in transcriptional regulatory networks in bacteria

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323155

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323155

Computational systems biology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323155

Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323155

Regulation of gene expression in flux balance models of metabolism

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323155

A new approach to decoding life: systems biology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323155

In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323155

Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323155

Fundamental patterns underlying gene expression profiles: simplicity from complexity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323155

Cell signaling pathways as control modules: complexity for simplicity?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323155

Toward metabolic phenomics: analysis of genomic data using flux balances

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323155

Cluster analysis and display of genome-wide expression patterns

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323155

Transcription activation by Escherichia coli FNR protein: similarities to, and differences from, the CRP paradigm

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323155

Transcriptional activation by FNR and CRP: reciprocity of binding-site recognition

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323155

Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323155

Systems biology: a brief overview

28 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505231102

Systems biology. Life's complexity pyramid

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505231102

Genome-scale models of microbial cells: evaluating the consequences of constraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505231102

Large-scale evaluation of in silico gene deletions in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505231102

Metabolic gene-deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505231102

Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505231102

The quickhull algorithm for convex hulls

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505231102

Modular epistasis in yeast metabolism

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323155

On the complete determination of biological systems

28 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505231102

Tumor-selective action of HDAC inhibitors involves TRAIL induction in acute myeloid leukemia cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505231102

Metabolic capacity of Bacillus subtilis for the production of purine nucleosides, riboflavin, and folic acid

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16357206

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1073/PNAS.0505231102

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/bzbz2y3sjzcohc7nuilrew2zmu

30 July 2022

release_bzbz2y3sjzcohc7nuilrew2zmu

ADS bibcode

2005PNAS..10219103B

0 references

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/bzbz2y3sjzcohc7nuilrew2zmu

30 July 2022

https://api.fatcat.wiki/v0/release/bzbz2y3sjzcohc7nuilrew2zmu

1 reference

30 July 2022

https://api.fatcat.wiki/v0/release/bzbz2y3sjzcohc7nuilrew2zmu

PubMed publication ID

1 reference

30 July 2022