Comparative genomics: genome-wide analysis in metazoan eukaryotes (Q34187800)

31 July 2017

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title

Comparative genomics: genome-wide analysis in metazoan eukaryotes (English)

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31 July 2017

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3

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31 July 2017

1

Abel Ureta-Vidal

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author name string

Laurence Ettwiller

series ordinal

2

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31 July 2017

publication date

1 April 2003

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31 July 2017

published in

Nature Reviews Genetics

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31 July 2017

volume

4

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31 July 2017

issue

4

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31 July 2017

page(s)

251-262

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Genome sequence of the nematode C. elegans: a platform for investigating biology

31 July 2017

cites work

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The genome sequence of Drosophila melanogaster

31 March 2020

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Initial sequencing and analysis of the human genome

31 March 2020

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The Sequence of the Human Genome

31 March 2020

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Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

31 March 2020

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The Genome Sequence of the Malaria Mosquito Anopheles gambiae

31 March 2020

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Initial sequencing and comparative analysis of the mouse genome

31 March 2020

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The Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate Origins

31 March 2020

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A comparative genomic analysis of two distant diptera, the fruit fly, Drosophila melanogaster, and the malaria mosquito, Anopheles gambiae

31 March 2020

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Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster

31 March 2020

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Human chromosome 19 and related regions in mouse: conservative and lineage-specific evolution

31 March 2020

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A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome

31 March 2020

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The origin and evolution of model organisms

31 March 2020

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A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

31 March 2020

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Grasses as a single genetic system: reassessment 2001

31 March 2020

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Comparative genomic analysis of plant-associated bacteria

31 March 2020

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Comparative genomics of closely related salmonellae

31 March 2020

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The evolution of mycobacterial pathogenicity: clues from comparative genomics

31 March 2020

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Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three salmonella enterica serovars, Typhimurium, Typhi and Paratyphi

31 March 2020

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Evolutionary Rate at the Molecular Level

31 March 2020

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31 March 2020

Non-Darwinian Evolution

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Comparison of genomic DNA sequences: solved and unsolved problems

31 March 2020

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Identification of common molecular subsequences

31 March 2020

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A general method applicable to the search for similarities in the amino acid sequence of two proteins

31 March 2020

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VISTA : visualizing global DNA sequence alignments of arbitrary length

31 March 2020

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WormBase: a cross-species database for comparative genomics

31 March 2020

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Ensembl 2002: accommodating comparative genomics

31 March 2020

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The UCSC Genome Browser Database

31 March 2020

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GALA, a database for genomic sequence alignments and annotations

31 March 2020

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An apolipoprotein influencing triglycerides in humans and mice revealed by comparative sequencing

31 March 2020

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Human-mouse genome comparisons to locate regulatory sites

31 March 2020

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Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs

31 March 2020

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Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequence

31 March 2020

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Fugu and human sequence comparison identifies novel human genes and conserved non-coding sequences

31 March 2020

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Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment

31 March 2020

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Alignment of whole genomes

31 March 2020

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Fast algorithms for large-scale genome alignment and comparison

31 March 2020

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PatternHunter: faster and more sensitive homology search

31 March 2020

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Human and mouse gene structure: comparative analysis and application to exon prediction

31 March 2020

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31 March 2020

The phusion assembler

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

31 March 2020

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Human-mouse alignments with BLASTZ

31 March 2020

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BLAT—The BLAST-Like Alignment Tool

31 March 2020

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AVID: A global alignment program

31 March 2020

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Strategies and tools for whole-genome alignments

31 March 2020

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LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA

31 March 2020

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PipMaker--a web server for aligning two genomic DNA sequences

31 March 2020

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PipTools: a computational toolkit to annotate and analyze pairwise comparisons of genomic sequences

31 March 2020

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Association between divergence and interspersed repeats in mammalian noncoding genomic DNA.

31 March 2020

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Computational prediction of eukaryotic protein-coding genes

31 March 2020

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Prediction of complete gene structures in human genomic DNA

31 March 2020

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SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov model

31 March 2020

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Applications of Generalized Pair Hidden Markov Models to Alignment and Gene Finding Problems

31 March 2020

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Comparative ab initio prediction of gene structures using pair HMMs

31 March 2020

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Integrating genomic homology into gene structure prediction.

31 March 2020

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SGP-1: prediction and validation of homologous genes based on sequence alignments

31 March 2020

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Computational inference of homologous gene structures in the human genome

31 March 2020

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Embryonic epsilon and gamma globin genes of a prosimian primate (Galago crassicaudatus). Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints.

31 March 2020

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Enrichment of regulatory signals in conserved non-coding genomic sequence

31 March 2020

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Discovery and modeling of transcriptional regulatory regions

31 March 2020

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Detecting conserved regulatory elements with the model genome of the Japanese puffer fish, Fugu rubripes

31 March 2020

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Comparative genome analysis delimits a chromosomal domain and identifies key regulatory elements in the alpha globin cluster

31 March 2020

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31 March 2020

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Annotating regulatory DNA based on man-mouse genomic comparison

31 March 2020

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The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data

31 March 2020

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Alu-mediated phylogenetic novelties in gene regulation and development

31 March 2020

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Evolution of cis-acting elements in 5' flanking regions of vertebrate actin genes.

31 March 2020

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Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover

31 March 2020

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Evidence for stabilizing selection in a eukaryotic enhancer element.

31 March 2020

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Distinguishing regulatory DNA from neutral sites

31 March 2020

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Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation

31 March 2020

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DIALIGN: finding local similarities by multiple sequence alignment

31 March 2020

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Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

31 March 2020

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Predicting gene regulatory elements in silico on a genomic scale

31 March 2020

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Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

31 March 2020

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Discovery of regulatory elements by a computational method for phylogenetic footprinting

31 March 2020

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Transcriptional regulation of the stem cell leukemia gene (SCL)--comparative analysis of five vertebrate SCL loci

31 March 2020

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Identification of a Coordinate Regulator of Interleukins 4, 13, and 5 by Cross-Species Sequence Comparisons

31 March 2020

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Active conservation of noncoding sequences revealed by three-way species comparisons

31 March 2020

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Bayesian adaptive sequence alignment algorithms.

31 March 2020

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Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

31 March 2020

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Identification of transcription factor binding sites in the human genome sequence

31 March 2020

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Recent developments in linear-space alignment methods: a survey.

31 March 2020

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

31 March 2020

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Multiple sequence alignment with hierarchical clustering

31 March 2020

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Comparison of five methods for finding conserved sequences in multiple alignments of gene regulatory regions

31 March 2020

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TRANSFAC: an integrated system for gene expression regulation

31 March 2020

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MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data

31 March 2020

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Detection and visualization of compositionally similar cis-regulatory element clusters in orthologous and coordinately controlled genes

31 March 2020

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rVista for comparative sequence-based discovery of functional transcription factor binding sites

31 March 2020

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Genomics. Vertebrate genomes compared.

31 March 2020

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Fugu: a compact vertebrate reference genome

31 March 2020

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Medaka--a model organism from the far East

31 March 2020

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31 March 2020

Identifiers

DOI

10.1038/NRG1043

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Dimensions Publication ID

31 July 2017

1009331603

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Fatcat ID

release_g5lxfhnweney5hzgct6tjc6qjm

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Fatcat

https://api.fatcat.wiki/v0/release/g5lxfhnweney5hzgct6tjc6qjm

mapped directly with Wikidata item

24 November 2022

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