A new method for inferring hidden markov models from noisy time sequences (Q34128488)

31 July 2017

title

A new method for inferring hidden markov models from noisy time sequences (English)

1 reference

31 July 2017

Andrew Hudson

3

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Karoline Wiesner

object named as

Karoline Wiesner

series ordinal

4

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Mark S. Dillingham

object named as

Mark Dillingham

series ordinal

2

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author name string

David Kelly

series ordinal

1

1 reference

31 July 2017

language of work or name

English

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publication date

11 January 2012

1 reference

31 July 2017

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31 July 2017

volume

7

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31 July 2017

issue

1

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31 July 2017

page(s)

e29703

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Creative Commons Attribution 4.0 International

31 July 2017

copyright license

start time

11 January 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Defining the limits of single-molecule FRET resolution in TIRF microscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256161

Energetics at the DNA supercoiling transition

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256161

Learning rates and states from biophysical time series: a Bayesian approach to model selection and single-molecule FRET data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256161

Visualizing protein-DNA interactions at the single-molecule level

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256161

Dissecting protein-induced DNA looping dynamics in real time

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256161

A Reducing and Oxidizing System Minimizes Photobleaching and Blinking of Fluorescent Dyes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256161

Optimising the precision for localising fluorescent proteins in living cells by 2D Gaussian fitting of digital images: application to COPII-coated endoplasmic reticulum exit sites.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256161

Multiscale complex network of protein conformational fluctuations in single-molecule time series

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256161

DNA looping kinetics analyzed using diffusive hidden Markov model.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256161

Automatic detection of single fluorophores in live cells.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256161

Objects that make objects: the population dynamics of structural complexity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256161

Analysis of single-molecule FRET trajectories using hidden Markov modeling

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256161

Observing spontaneous branch migration of Holliday junctions one step at a time

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256161

Conformational model of the Holliday junction transition deduced from molecular dynamics simulations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256161

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256161

Measuring conformational dynamics of biomolecules by single molecule fluorescence spectroscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256161

Inferring statistical complexity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256161

Single-molecule studies of DNA mechanics

5 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0029703

Hierarchical self-organization in the finitary process soup.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0029703

Extracting finite-state representations from recurrent neural networks trained on chaotic symbolic sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0029703

A tutorial on hidden Markov models and selected applications in speech recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0029703

Structural dynamics of individual Holliday junctions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0029703

Single-molecule studies of DNA and RNA four-way junctions

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22247783

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Accurate single-molecule FRET studies using multiparameter fluorescence detection

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22247783

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0029703

1 reference

31 July 2017

0 references

0 references

1 reference

31 July 2017

1 reference