STELLAR: fast and exact local alignments (Q34094543)

31 July 2017

title

STELLAR: fast and exact local alignments (English)

1 reference

31 July 2017

Birte Kehr

1

1 reference

31 July 2017

David Weese

series ordinal

2

1 reference

31 July 2017

Knut Reinert

series ordinal

3

1 reference

31 July 2017

publication date

5 October 2011

1 reference

31 July 2017

1 reference

31 July 2017

volume

12 Suppl 9

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31 July 2017

page(s)

S15

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Creative Commons Attribution 2.0 Generic

31 July 2017

copyright license

start time

5 October 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

RazerS--fast read mapping with sensitivity control

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

Fast and accurate short read alignment with Burrows-Wheeler transform

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

Multiple whole-genome alignments without a reference organism

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

FlyBase: enhancing Drosophila Gene Ontology annotations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

Mapping short DNA sequencing reads and calling variants using mapping quality scores

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

SeqMap: mapping massive amount of oligonucleotides to the genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

Mapping and quantifying mammalian transcriptomes by RNA-Seq

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

SOAP: short oligonucleotide alignment program

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

SeqAn an efficient, generic C++ library for sequence analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

Efficient q-gram filters for finding all epsilon-matches over a given length

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

A novel method for multiple alignment of sequences with repeated and shuffled elements

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

Aligning multiple genomic sequences with the threaded blockset aligner

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

Human-mouse alignments with BLASTZ

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

BLAT—The BLAST-Like Alignment Tool

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

A greedy algorithm for aligning DNA sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

Identification of common molecular subsequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

Improved tools for biological sequence comparison

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

A new algorithm for best subsequence alignments with application to tRNA-rRNA comparisons

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

Basic local alignment search tool

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283304

Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment.

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-S9-S15

Compressed indexing and local alignment of DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-S9-S15

Alignments without low-scoring regions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-S9-S15

Post-processing long pairwise alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-S9-S15

10.1186/1471-2105-12-S9-S15

21 January 2018

Identifiers

DOI

1 reference

31 July 2017

DBLP publication ID

journals/bmcbi/KehrWR11

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1015294560

0 references

Fatcat ID

release_nwuuykj4zfbx5cmjpj7fc7dlai

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/nwuuykj4zfbx5cmjpj7fc7dlai

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

3283304

1 reference

31 July 2017

1 reference