SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells. (Q34087933)

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English	SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells.	scientific article

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15 January 2020

SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells (English)

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15 January 2020

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Xavier Estivill i Pallejà

2

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15 January 2020

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15 January 2020

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Lorena Pantano

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15 January 2020

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11 December 2009

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15 January 2020

Nucleic Acids Research

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15 January 2020

38

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15 January 2020

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15 January 2020

e34

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20008100%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression

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28 July 2018

miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments

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28 July 2018

A combinatorial approach to determine the context-dependent role in transcriptional and posttranscriptional regulation in Arabidopsis thaliana

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28 July 2018

Bioinformatics analysis suggests base modifications of tRNAs and miRNAs in Arabidopsis thaliana

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28 July 2018

Computational and analytical framework for small RNA profiling by high-throughput sequencing

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28 July 2018

Alterations of the microRNA network cause neurodegenerative disease.

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28 July 2018

Small silencing RNAs: an expanding universe

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28 July 2018

Revisiting the principles of microRNA target recognition and mode of action

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28 July 2018

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

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In-depth characterization of the microRNA transcriptome in a leukemia progression model

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28 July 2018

Frequency and fate of microRNA editing in human brain

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28 July 2018

Mouse let-7 miRNA populations exhibit RNA editing that is constrained in the 5'-seed/ cleavage/anchor regions and stabilize predicted mmu-let-7a:mRNA duplexes

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28 July 2018

A-to-I RNA editing alters less-conserved residues of highly conserved coding regions: implications for dual functions in evolution

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28 July 2018

Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes

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28 July 2018

Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836562

28 July 2018

SOAP: short oligonucleotide alignment program

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28 July 2018

MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells

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28 July 2018

MicroRNA targeting specificity in mammals: determinants beyond seed pairing

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28 July 2018

A mammalian microRNA expression atlas based on small RNA library sequencing

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28 July 2018

RNA editing of the microRNA-151 precursor blocks cleavage by the Dicer-TRBP complex

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836562

28 July 2018

Redirection of silencing targets by adenosine-to-inosine editing of miRNAs

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28 July 2018

Approaches to microRNA discovery

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836562

28 July 2018

RNA editing of human microRNAs

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836562

28 July 2018

Identification and characterization of small RNAs involved in RNA silencing

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836562

28 July 2018

Combinatorial microRNA target predictions

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28 July 2018

Principles of microRNA-target recognition

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28 July 2018

RNA editing of a miRNA precursor

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Massively parallel signature sequencing (MPSS) as a tool for in-depth quantitative gene expression profiling in all organisms

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28 July 2018

The significance of digital gene expression profiles

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28 July 2018

A general method applicable to the search for similarities in the amino acid sequence of two proteins

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28 July 2018

Origins and Mechanisms of miRNAs and siRNAs

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21 January 2018

Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes

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https://api.crossref.org/works/10.1093%2FNAR%2FGKP1127

21 January 2018

A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice

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21 January 2018

MiRNAs and cancer

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21 January 2018

Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications.

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21 January 2018

Computational analysis of small RNA cloning data

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21 January 2018

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

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21 January 2018

On the Interpretation of χ 2 from Contingency Tables, and the Calculation of P

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Transcription factor map alignment of promoter regions

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Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

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10.1093/NAR/GKP1127

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Europe PubMed Central

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15 January 2020

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15 January 2020

PubMed publication ID

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15 January 2020

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