Exoribonucleases and their multiple roles in RNA metabolism (Q34070559)

30 July 2017

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title

Exoribonucleases and their multiple roles in RNA metabolism (English)

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30 July 2017

Deutscher MP

1

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30 July 2017

Li Z

series ordinal

2

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30 July 2017

language of work or name

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1 January 2001

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Progress in Molecular Biology and Translational Science

30 July 2017

published in

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30 July 2017

volume

66

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30 July 2017

page(s)

67-105

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Function, mechanism and regulation of bacterial ribonucleases

30 July 2017

cites work

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7 January 2021

The tRNA processing enzyme RNase T is essential for maturation of 5S RNA.

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7 January 2021

Maturation of 23S ribosomal RNA requires the exoribonuclease RNase T

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7 January 2021

The presence of only one of five exoribonucleases is sufficient to support the growth of Escherichia coli

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7 January 2021

Comparative sequence analysis of ribonucleases HII, III, II PH and D

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7 January 2021

The vacB gene required for virulence in Shigella flexneri and Escherichia coli encodes the exoribonuclease RNase R.

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7 January 2021

Overexpression, purification, and properties of Escherichia coli ribonuclease II

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7 January 2021

Different specificities of ribonuclease II and polynucleotide phosphorylase in 3'mRNA decay

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7 January 2021

The processive reaction mechanism of ribonuclease II.

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7 January 2021

The reaction mechanism of ribonuclease II and its interaction with nucleic acid secondary structures

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7 January 2021

Differential sensitivities of portions of the mRNA for ribosomal protein S20 to 3'-exonucleases dependent on oligoadenylation and RNA secondary structure.

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7 January 2021

DNA sequencing and expression of the gene rnb encoding Escherichia coli ribonuclease II.

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7 January 2021

PNPase modulates RNase II expression in Escherichia coli: implications for mRNA decay and cell metabolism

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7 January 2021

Escherichia coli mutants deficient in exoribonucleases

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7 January 2021

The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold

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7 January 2021

vacB, a novel chromosomal gene required for expression of virulence genes on the large plasmid of Shigella flexneri

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7 January 2021

Properties of a Bacillus subtilis polynucleotide phosphorylase deletion strain

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7 January 2021

The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases

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7 January 2021

The fission yeast dis3+ gene encodes a 110-kDa essential protein implicated in mitotic control

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7 January 2021

Human dis3p, which binds to either GTP- or GDP-Ran, complements Saccharomyces cerevisiae dis3

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7 January 2021

The SIT4 protein phosphatase functions in late G1 for progression into S phase

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7 January 2021

The Saccharomyces cerevisiae SRK1 gene, a suppressor of bcy1 and ins1, may be involved in protein phosphatase function

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7 January 2021

The MCS1/SSD1/SRK1/SSL1 gene is involved in stable maintenance of the chromosome in yeast

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7 January 2021

Ssd1p of Saccharomyces cerevisiae associates with RNA.

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7 January 2021

A conditional U5 snRNA mutation affecting pre-mRNA splicing and nuclear pre-mRNA retention identifies SSD1/SRK1 as a general splicing mutant suppressor

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7 January 2021

The novel nuclear gene DSS-1 of Saccharomyces cerevisiae is necessary for mitochondrial biogenesis

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7 January 2021

The yeast nuclear gene DSS1, which codes for a putative RNase II, is necessary for the function of the mitochondrial degradosome in processing and turnover of RNA.

1 reference

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7 January 2021

RNA splicing in neurospora mitochondria: Nuclear mutants defective in both splicing and 3′ end synthesis of the large rRNA

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7 January 2021

RNA splicing in Neurospora mitochondria. Characterization of new nuclear mutants with defects in splicing the mitochondrial large rRNA

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7 January 2021

The proofreading domain of Escherichia coli DNA polymerase I and other DNA and/or RNA exonuclease domains

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7 January 2021

RNase T shares conserved sequence motifs with DNA proofreading exonucleases

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7 January 2021

Purification of potential 3′ processing nucleases using synthetic tRNA precursors

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7 January 2021

Escherichia coli RNase D: sequencing of the rnd structural gene and purification of the overexpressed protein

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7 January 2021

Multiple exoribonucleases are required for the 3' processing of Escherichia coli tRNA precursors in vivo.

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7 January 2021

Genetic mapping of mutation in Escherichia coli leading to a temperature-sensitive RNase D

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7 January 2021

Poly(A) tail shortening by a mammalian poly(A)-specific 3'-exoribonuclease

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7 January 2021

The deadenylating nuclease (DAN) is involved in poly(A) tail removal during the meiotic maturation of Xenopus oocytes.

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7 January 2021

Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8 S rRNA 3' end formation

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7 January 2021

Functions of the exosome in rRNA, snoRNA and snRNA synthesis

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7 January 2021

The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleases

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7 January 2021

Cloning and characterization of the cDNA coding for a polymyositis-scleroderma overlap syndrome-related nucleolar 100-kD protein

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7 January 2021

Cloning of a complementary DNA coding for the 100-kD antigenic protein of the PM-Scl autoantigen

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7 January 2021

RNase T affects Escherichia coli growth and recovery from metabolic stress

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7 January 2021

The role of individual cysteine residues in the activity of Escherichia coli RNase T

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7 January 2021

Escherichia coli RNase T functions in vivo as a dimer dependent on cysteine 168

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7 January 2021

Identification of a potent DNase activity associated with RNase T of Escherichia coli

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7 January 2021

The DNase activity of RNase T and its application to DNA cloning

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https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

Localization of the Escherichia coli rnt gene encoding RNase T by using a combination of physical and genetic mapping

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https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

The gene for the longest known Escherichia coli protein is a member of helicase superfamily II.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

The yeast Pan2 protein is required for poly(A)-binding protein-stimulated poly(A)-nuclease activity

1 reference

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7 January 2021

PAN3 encodes a subunit of the Pab1p-dependent poly(A) nuclease in Saccharomyces cerevisiae

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7 January 2021

Oligoribonuclease is distinct from the other known exoribonucleases of Escherichia coli

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https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

A conserved ancient domain joins the growing superfamily of 3′–5′ exonucleases

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7 January 2021

A mutant of escherichia coli defective in removing 3′ terminal nucleotides from some transfer RNA precursor molecules

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7 January 2021

Isolation of an Escherichia coli strain restricting bacteriophage suppressor

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7 January 2021

Purification and characterization of the tRNA-processing enzyme RNase BN

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

Identification and characterization of the Escherichia coli rbn gene encoding the tRNA processing enzyme RNase BN.

1 reference

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7 January 2021

Functional Overlap of tRNA Nucleotidyltransferase, Poly(A) Polymerase I, and Polynucleotide Phosphorylase

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7 January 2021

Reconstitution of the degradation of the mRNA for ribosomal protein S20 with purified enzymes

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7 January 2021

Quaternary structure ofEscherichia colipolynucleotide phosphorylase: new evidence for a trimeric structure

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7 January 2021

Quaternary Structure of Polynucleotide Phosphorylase from Escherichia coli: Evidence of a Complex between Two Types of Polypeptide Chains

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7 January 2021

A DEAD-box RNA helicase in the Escherichia coli RNA degradosome

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7 January 2021

Copurification of E. coli RNAase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation.

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7 January 2021

RNA degradation in Escherichia coli regulated by 3' adenylation and 5' phosphorylation

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7 January 2021

Preferential degradation of polyadenylated and polyuridinylated RNAs by the bacterial exoribonuclease polynucleotide phosphorylase

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7 January 2021

Promoter activity and transcript mapping in the regulatory region for genes encoding ribosomal protein S15 and polynucleotide phosphorylase of Escherichia coli

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7 January 2021

The first step in the functional inactivation of the Escherichia coli polynucleotide phosphorylase messenger is a ribonuclease III processing at the 5' end.

1 reference

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7 January 2021

Polynucleotide phosphorylase of Escherichia coli induces the degradation of its RNase III processed messenger by preventing its translation

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7 January 2021

A novel mutation in the KH domain of polynucleotide phosphorylase affects autoregulation and mRNA decay in Escherichia coli

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7 January 2021

Tn5 insertion in the polynucleotide phosphorylase (pnp) gene in Escherichia coli increases susceptibility to antibiotics

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7 January 2021

Polynucleotide phosphorylase is necessary for competence development in Bacillus subtilis

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7 January 2021

Induction of proteins in response to low temperature in Escherichia coli

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7 January 2021

The gene coding for polynucleotide phosphorylase in Photorhabdus sp. strain K122 is induced at low temperatures

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7 January 2021

The psychrotrophic bacterium Yersinia enterocolitica requires expression of pnp, the gene for polynucleotide phosphorylase, for growth at low temperature (5 degrees C).

1 reference

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7 January 2021

An essential function for the phosphate-dependent exoribonucleases RNase PH and polynucleotide phosphorylase

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7 January 2021

Incorporation of water oxygens into intracellular nucleotides and RNA. II. Predominantly hydrolytic RNA turnover in Escherichia coli

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7 January 2021

Guanosine pentaphosphate synthetase from Streptomyces antibioticus is also a polynucleotide phosphorylase

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7 January 2021

Chloroplast mRNA 3'-end processing by a high molecular weight protein complex is regulated by nuclear encoded RNA binding proteins

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7 January 2021

The mechanism of preferential degradation of polyadenylated RNA in the chloroplast. The exoribonuclease 100RNP/polynucleotide phosphorylase displays high binding affinity for poly(A) sequence

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

Polynucleotide phosphorylase is a component of a novel plant poly(A) polymerase.

1 reference

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7 January 2021

Escherichia coli orfE (upstream of pyrE) encodes RNase PH.

1 reference

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7 January 2021

Nucleotide sequence of the Escherichia coli pyrE gene and of the DNA in front of the protein-coding region

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https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

RNase PH catalyzes a synthetic reaction, the addition of nucleotides to the 3′ end of RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

The Escherichia coli K-12 "wild types" W3110 and MG1655 have an rph frameshift mutation that leads to pyrimidine starvation due to low pyrE expression levels

1 reference

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7 January 2021

Molecular and mutational analysis of three genes preceding pyrE on the Escherichia coli chromosome

1 reference

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7 January 2021

Identification of the rph (RNase PH) gene of Bacillus subtilis: evidence for suppression of cold-sensitive mutations in Escherichia coli

1 reference

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7 January 2021

Ski6p is a homolog of RNA-processing enzymes that affects translation of non-poly(A) mRNAs and 60S ribosomal subunit biogenesis

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

The exosome subunit Rrp43p is required for the efficient maturation of 5.8S, 18S and 25S rRNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

Active-site mutations in the Xrn1p exoribonuclease of Saccharomyces cerevisiae reveal a specific role in meiosis

1 reference

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7 January 2021

An exoribonuclease from saccharomyces cerevisiae: Effect of modifications of 5′ end groups on the hydrolysis of substrates to 5′ mononucleotides

1 reference

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7 January 2021

Evidence for a 5′ → 3′ direction of hydrolysis by a 5′ mononucleotide-producing exoribonuclease from Saccharomyces cerevisiae

1 reference

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7 January 2021

A 5'----3' exoribonuclease of Saccharomyces cerevisiae: size and novel substrate specificity

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

Disruption of the gene XRN1, coding for a 5'----3' exoribonuclease, restricts yeast cell growth

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

Characterization of the XRN1 gene encoding a 5'-->3' exoribonuclease: sequence data and analysis of disparate protein and mRNA levels of gene-disrupted yeast cells

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

Regulation and intracellular localization of Saccharomyces cerevisiae strand exchange protein 1 (Sep1/Xrn1/Kem1), a multifunctional exonuclease

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

Yeast cells lacking 5'-->3' exoribonuclease 1 contain mRNA species that are poly(A) deficient and partially lack the 5' cap structure

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5'-->3' digestion of the transcript

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

A turnover pathway for both stable and unstable mRNAs in yeast: evidence for a requirement for deadenylation

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

Processing of the precursors to small nucleolar RNAs and rRNAs requires common components

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

Fragments of the internal transcribed spacer 1 of pre-rRNA accumulate in Saccharomyces cerevisiae lacking 5'----3' exoribonuclease 1

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

mRNA-decapping enzyme from Saccharomyces cerevisiae: purification and unique specificity for long RNA chains

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

An essential yeast gene with homology to the exonuclease-encoding XRN1/KEM1 gene also encodes a protein with exoribonuclease activity

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

TAP1, a yeast gene that activates the expression of a tRNA gene with a defective internal promoter.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

Isolation and characterization of RAT1: an essential gene of Saccharomyces cerevisiae required for the efficient nucleocytoplasmic trafficking of mRNA

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

5'-exonuclease-2 of Saccharomyces cerevisiae. Purification and features of ribonuclease activity with comparison to 5'-exonuclease-1

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

Structural modifications of RNA influence the 5' exoribonucleolytic hydrolysis by XRN1 and HKE1 of Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

Rat1p and Xrn1p Are Functionally Interchangeable Exoribonucleases That Are Restricted to and Required in the Nucleus and Cytoplasm, Respectively

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

Molecular analysis of the dhp1+ gene of Schizosaccharomyces pombe: an essential gene that has homology to the DST2 and RAT1 genes of Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

Characterization of cDNA encoding mouse homolog of fission yeast dhp1+ gene: structural and functional conservation

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

Cloning and mapping of the XRN2 gene to human chromosome 20p11.1-p11.2

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

The 3' end of yeast 5.8S rRNA is generated by an exonuclease processing mechanism

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

Purification and properties of a novel nucleolar exoribonuclease capable of degrading both single-stranded and double-stranded RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

Purification and mode of action of a microsomal exoribonuclease from rat liver.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

A cytoplasmic exoribonuclease from HeLa cells

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

Pre-tRNA 3'-processing in Saccharomyces cerevisiae. Purification and characterization of exo- and endoribonucleases

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2966027-0

7 January 2021

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1 reference

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Identifiers

DOI

1 reference

30 July 2017

1 reference