Light-regulated gene repositioning in Arabidopsis (Q34060444)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24390011%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

title

Light-regulated gene repositioning in Arabidopsis (English)

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4 March 2020

2

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4 March 2020

Meng Chen

5

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4 March 2020

author name string

Chun-Miao Feng

1

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4 March 2020

Elise K Van Buskirk

3

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4 March 2020

Emily J Yang

4

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4 March 2020

language of work or name

English

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publication date

1 January 2014

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4 March 2020

published in

Nature Communications

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4 March 2020

volume

5

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4 March 2020

page(s)

3027

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Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways.

4 March 2020

cites work

1 reference

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Photoactivated phytochromes interact with HEMERA and promote its accumulation to establish photomorphogenesis in Arabidopsis.

5 July 2018

1 reference

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Transcription factor binding to a DNA zip code controls interchromosomal clustering at the nuclear periphery

5 July 2018

1 reference

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Interaction of Arabidopsis DET1 with CCA1 and LHY in mediating transcriptional repression in the plant circadian clock.

5 July 2018

1 reference

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Phytochrome signaling mechanisms and the control of plant development

5 July 2018

1 reference

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Blue-light-dependent interaction of cryptochrome 1 with SPA1 defines a dynamic signaling mechanism

5 July 2018

1 reference

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Organization and dynamics of plant interphase chromosomes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Gene positioning and expression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Genome-wide mapping of the HY5-mediated gene networks in Arabidopsis that involve both transcriptional and post-transcriptional regulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Interaction of a DNA Zip Code with the Nuclear Pore Complex Promotes H2A.Z Incorporation and INO1 Transcriptional Memory

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

PIFs: pivotal components in a cellular signaling hub

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Arabidopsis HEMERA/pTAC12 initiates photomorphogenesis by phytochromes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

High frequency, cell type-specific visualization of fluorescent-tagged genomic sites in interphase and mitotic cells of living Arabidopsis plants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

DNA zip codes control an ancient mechanism for gene targeting to the nuclear periphery

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

The clock protein CCA1 and the bZIP transcription factor HY5 physically interact to regulate gene expression in Arabidopsis.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Phytochrome functions in Arabidopsis development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Phytochrome B and histone deacetylase 6 control light-induced chromatin compaction in Arabidopsis thaliana

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Multiple phytochrome-interacting bHLH transcription factors repress premature seedling photomorphogenesis in darkness

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

The meaning of gene positioning

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Moving chromatin within the interphase nucleus-controlled transitions?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Light-regulated transcriptional networks in higher plants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Glucose-responsive regulators of gene expression in Saccharomyces cerevisiae function at the nuclear periphery via a reverse recruitment mechanism

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Cotranscriptional recruitment to the mRNA export receptor Mex67p contributes to nuclear pore anchoring of activated genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Chromatin organization and cell fate switch respond to positional information in Arabidopsis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Chromosome territory arrangement and homologous pairing in nuclei of Arabidopsis thaliana are predominantly random except for NOR-bearing chromosomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Gene recruitment of the activated INO1 locus to the nuclear membrane

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Recent progress in chromosome painting of Arabidopsis and related species.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Interphase chromosomes in Arabidopsis are organized as well defined chromocenters from which euchromatin loops emanate

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Chromatin organization and its relation to replication and histone acetylation during the cell cycle in barley

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Histone H4 acetylation of euchromatin and heterochromatin is cell cycle dependent and correlated with replication rather than with transcription

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Divergence time estimates for the early history of animal phyla and the origin of plants, animals and fungi

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

cop1: a regulatory locus involved in light-controlled development and gene expression in Arabidopsis.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136543

Definition of early transcriptional circuitry involved in light-induced reversal of PIF-imposed repression of photomorphogenesis in young Arabidopsis seedlings.

5 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4027

Genome-wide transposon tagging reveals location-dependent effects on transcription and chromatin organization in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4027

Physical clustering of FLC alleles during Polycomb-mediated epigenetic silencing in vernalization

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4027

Tandem repetitive transgenes and fluorescent chromatin tags alter local interphase chromosome arrangement in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4027

Centromeric localization and adaptive evolution of an Arabidopsis histone H3 variant

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4027

Genetic definition and sequence analysis of Arabidopsis centromeres

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4027

Expression of Light-Harvesting Chlorophyll a/b-Protein Genes Is Phytochrome-Regulated in Etiolated Arabidopsis thaliana Seedlings.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4027

HY5, Circadian Clock-Associated 1, and a cis-Element, DET1 Dark Response Element, Mediate DET1 Regulation ofChlorophyll a/b-Binding Protein 2Expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4027

Arabidopsis thaliana mutant that develops as a light-grown plant in the absence of light

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4027

Arabidopsis CULLIN4-damaged DNA binding protein 1 interacts with CONSTITUTIVELY PHOTOMORPHOGENIC1-SUPPRESSOR OF PHYA complexes to regulate photomorphogenesis and flowering time.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4027

CUL4 associates with DDB1 and DET1 and its downregulation affects diverse aspects of development in Arabidopsis thaliana.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4027

Targeted destabilization of HY5 during light-regulated development of Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4027

Constitutive photomorphogenesis 1 and multiple photoreceptors control degradation of phytochrome interacting factor 3, a transcription factor required for light signaling in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4027

PHYTOCHROME INTERACTING FACTOR3 associates with the histone deacetylase HDA15 in repression of chlorophyll biosynthesis and photosynthesis in etiolated Arabidopsis seedlings

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4027

Mutations in the gene for the red/far-red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4027

Light-independent phytochrome signaling mediated by dominant GAF domain tyrosine mutants of Arabidopsis phytochromes in transgenic plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4027

NUCLEAR PORE ANCHOR, the Arabidopsis homolog of Tpr/Mlp1/Mlp2/megator, is involved in mRNA export and SUMO homeostasis and affects diverse aspects of plant development

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4027

A highly repeated DNA sequence in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4027

Refined examination of plant metaphase chromosome structure at different levels made feasible by new isolation methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4027

In situ genotyping individual DNA molecules by target-primed rolling-circle amplification of padlock probes

21 January 2018

1 reference

12 December 2020

Visualization of large-scale chromatin structure and dynamics using the lac operator/lac repressor reporter system

1 reference

12 December 2020

Fluence and Wavelength Requirements for Arabidopsis CAB Gene Induction by Different Phytochromes

1 reference

12 December 2020

Far-red light blocks greening of Arabidopsis seedlings via a phytochrome A-mediated change in plastid development

1 reference

12 December 2020

Isolation and Initial Characterization of Arabidopsis Mutants That Are Deficient in Phytochrome A

1 reference

12 December 2020

The Photomorphogenesis Regulator DET1 Binds the Amino-Terminal Tail of Histone H2B in a Nucleosome Context

1 reference

12 December 2020

Identifiers

DOI

10.1038/NCOMMS4027

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24390011%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

4 March 2020

ADS bibcode

2014NatCo...5.3027F

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0 references

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4 March 2020

PubMed publication ID

24390011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24390011%20AND%20SRC:MED&resulttype=core&format=json