Recent developments in genomewide association scans: a workshop summary and review (Q34021104)

30 July 2017

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title

Recent developments in genomewide association scans: a workshop summary and review (English)

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30 July 2017

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Duncan C Thomas

1

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30 July 2017

Robert W Haile

series ordinal

2

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30 July 2017

David Duggan

series ordinal

3

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30 July 2017

language of work or name

English

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publication date

1 August 2005

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American Journal of Human Genetics

30 July 2017

published in

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30 July 2017

volume

77

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30 July 2017

issue

3

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30 July 2017

page(s)

337-345

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Shaking the tree: mapping complex disease genes with linkage disequilibrium

30 July 2017

cites work

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5 July 2018

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5 July 2018

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Whole-genome patterns of common DNA variation in three human populations

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Multiple rare variants in different genes account for multifactorial inherited susceptibility to colorectal adenomas

5 July 2018

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5 July 2018

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5 July 2018

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Pattern of sequence variation across 213 environmental response genes

5 July 2018

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Population history and natural selection shape patterns of genetic variation in 132 genes

5 July 2018

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5 July 2018

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Large-scale copy number polymorphism in the human genome

5 July 2018

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The future of association studies: gene-based analysis and replication

5 July 2018

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Genetic analysis of genome-wide variation in human gene expression

5 July 2018

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The multiethnic cohort study: exploring genes, lifestyle and cancer risk

5 July 2018

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The Breast Cancer Family Registry: an infrastructure for cooperative multinational, interdisciplinary and translational studies of the genetic epidemiology of breast cancer

5 July 2018

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Mapping complex disease loci in whole-genome association studies

5 July 2018

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Ultraconserved Elements in the Human Genome

5 July 2018

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Functional variation in LGALS2 confers risk of myocardial infarction and regulates lymphotoxin-alpha secretion in vitro

5 July 2018

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Methods for high-density admixture mapping of disease genes

5 July 2018

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Assessing the impact of population stratification on genetic association studies

5 July 2018

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Assessing the probability that a positive report is false: an approach for molecular epidemiology studies

5 July 2018

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An evolutionary perspective on single-nucleotide polymorphism screening in molecular cancer epidemiology

5 July 2018

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A simple correction for multiple testing for single-nucleotide polymorphisms in linkage disequilibrium with each other

5 July 2018

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Parallel genotyping of over 10,000 SNPs using a one-primer assay on a high-density oligonucleotide array

5 July 2018

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Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium

5 July 2018

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Modeling and E-M estimation of haplotype-specific relative risks from genotype data for a case-control study of unrelated individuals

5 July 2018

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"Are we there yet?": Deciding when one has demonstrated specific genetic causation in complex diseases and quantitative traits.

5 July 2018

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Y-chromosome evidence for differing ancient demographic histories in the Americas

5 July 2018

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Estimation of the inbreeding coefficient through use of genomic data

5 July 2018

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Statistical significance for genomewide studies

5 July 2018

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SIFT: Predicting amino acid changes that affect protein function

5 July 2018

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PARSESNP: A tool for the analysis of nucleotide polymorphisms

5 July 2018

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False discovery rate in linkage and association genome screens for complex disorders.

5 July 2018

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Additional SNPs and linkage-disequilibrium analyses are necessary for whole-genome association studies in humans

5 July 2018

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On the identification of disease mutations by the analysis of haplotype similarity and goodness of fit.

5 July 2018

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Discovering genotypes underlying human phenotypes: past successes for mendelian disease, future approaches for complex disease

5 July 2018

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Population stratification and spurious allelic association

5 July 2018

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Undetected genotyping errors cause apparent overtransmission of common alleles in the transmission/disequilibrium test

5 July 2018

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Meta-analysis of genetic association studies supports a contribution of common variants to susceptibility to common disease

5 July 2018

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Identification of the sources of error in allele frequency estimations from pooled DNA indicates an optimal experimental design

5 July 2018

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Association testing by DNA pooling: an effective initial screen

5 July 2018

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DNA Pooling: a tool for large-scale association studies

5 July 2018

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Sequence first. Ask questions later

5 July 2018

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The allelic architecture of human disease genes: common disease-common variant... or not?

5 July 2018

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How many SNPs does a genome-wide haplotype map require?

5 July 2018

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Point: population stratification: a problem for case-control studies of candidate-gene associations?

5 July 2018

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Genomic control, a new approach to genetic-based association studies

5 July 2018

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Linkage disequilibrium: what history has to tell us.

5 July 2018

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Score tests for association between traits and haplotypes when linkage phase is ambiguous

5 July 2018

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Epidemiological methods for studying genes and environmental factors in complex diseases

5 July 2018

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On the allelic spectrum of human disease

5 July 2018

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A transmission/disequilibrium test that allows for genotyping errors in the analysis of single-nucleotide polymorphism data

5 July 2018

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Are rare variants responsible for susceptibility to complex diseases?

5 July 2018

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Genetic differentiation in South Amerindians is related to environmental and cultural diversity: evidence from the Y chromosome

5 July 2018

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Mining for SNPs: putting the common variants--common disease hypothesis to the test

5 July 2018

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Association study designs for complex diseases

5 July 2018

1 reference

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Estimation of admixture and detection of linkage in admixed populations by a Bayesian approach: application to African-American populations

5 July 2018

1 reference

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Population structure in admixed populations: effect of admixture dynamics on the pattern of linkage disequilibrium.

5 July 2018

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Genetic diversity in an Andean population from Peru and regional migration patterns of Amerindians in South America: data from Y chromosome and mitochondrial DNA.

5 July 2018

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Study-design issues in the development of the University of Southern California Consortium's Colorectal Cancer Family Registry

5 July 2018

1 reference

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Cohort studies for characterizing measured genes.

5 July 2018

1 reference

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Association mapping in structured populations

5 July 2018

1 reference

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Admixture studies in Latin America: from the 20th to the 21st century.

5 July 2018

1 reference

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Divergent human Y-chromosome microsatellite evolution rates

5 July 2018

1 reference

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Estimating African American admixture proportions by use of population-specific alleles

5 July 2018

1 reference

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On the statistical analysis of allelic-loss data

5 July 2018

1 reference

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The future of genetic studies of complex human diseases

5 July 2018

1 reference

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Limits of resolution of genetic linkage studies: implications for the positional cloning of human disease genes

5 July 2018

1 reference

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The health of Hispanics in the southwestern United States: an epidemiologic paradox

5 July 2018

1 reference

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Linkage strategies for genetically complex traits. I. Multilocus models

5 July 2018

1 reference

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A genome-wide scalable SNP genotyping assay using microarray technology

5 July 2018

1 reference

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Incorporating individual error rate into association test of unmatched case-control design.

29 October 2018

1 reference

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Genome-wide strategies for detecting multiple loci that influence complex diseases.

29 October 2018

1 reference

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Genotyping over 100,000 SNPs on a pair of oligonucleotide arrays.

29 October 2018

1 reference

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Two-Stage sampling designs for gene association studies

29 October 2018

1 reference

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Exhaustive allelic transmission disequilibrium tests as a new approach to genome-wide association studies.

29 October 2018

1 reference

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Increased power for case-control studies of single nucleotide polymorphisms through incorporation of family history and genetic constraints

29 October 2018

1 reference

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Two-stage designs for gene-disease association studies with sample size constraints

29 October 2018

1 reference

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Highly parallel SNP genotyping

29 October 2018

1 reference

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Many amino acid substitution variants identified in DNA repair genes during human population screenings are predicted to impact protein function

29 October 2018

1 reference

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A framework for controlling false discovery rates and minimizing the amount of genotyping in the search for disease mutations

29 October 2018

1 reference

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Cost-effective analysis of candidate genes using htSNPs: a staged approach

29 October 2018

1 reference

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The impact of SNP density on fine-scale patterns of linkage disequilibrium

29 October 2018

1 reference

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Cancer statistics for Hispanics, 2003.

29 October 2018

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Optimal two-stage genotyping in population-based association studies

29 October 2018

1 reference

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Allowing for genotyping error in analysis of unmatched case-control studies.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1226200

Functional SNPs in the lymphotoxin-alpha gene that are associated with susceptibility to myocardial infarction

29 October 2018

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Empirical bayes methods and false discovery rates for microarrays

29 October 2018

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Counterpoint: bias from population stratification is not a major threat to the validity of conclusions from epidemiological studies of common polymorphisms and cancer.

29 October 2018

1 reference

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Testing association of statistically inferred haplotypes with discrete and continuous traits in samples of unrelated individuals.

29 October 2018

1 reference

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Candidate-gene approaches for studying complex genetic traits: practical considerations

29 October 2018

1 reference

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Adjusting for population structure in admixed populations.

29 October 2018

1 reference

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Ancestral proportions and admixture dynamics in geographically defined African Americans living in South Carolina

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1226200

Asymptotic bias and efficiency in case-control studies of candidate genes and gene-environment interactions: basic family designs

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1226200

Concordance for Hodgkin's disease in identical twins suggesting genetic susceptibility to the young-adult form of the disease

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1226200

Genome scans and candidate gene approaches in the study of common diseases and variable drug responses

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1226200

Efficiency of DNA pooling to estimate joint allele frequencies and measure linkage disequilibrium

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1226200

The usefulness of different density SNP maps for disease association studies of common variants

29 October 2018

1 reference

12 December 2020

Variations on a theme: cataloging human DNA sequence variation

1 reference

12 December 2020

Two-Stage Designs for Gene-Disease Association Studies

1 reference

12 December 2020

DYS19 and DYS199 loci in a Chilean population of mixed ancestry

1 reference

12 December 2020

Increasing power for tests of genetic association in the presence of phenotype and/or genotype error by use of double-sampling

1 reference

12 December 2020

Association mapping of complex diseases in linked regions: estimation of genetic effects and feasibility of testing rare variants

1 reference

12 December 2020

Prospects for whole-genome linkage disequilibrium mapping of common disease genes

1 reference

12 December 2020

Polygenic inheritance of breast cancer: Implications for design of association studies

1 reference

12 December 2020

Genome-wide scan in a large complex pedigree with predominantly male schizophrenics from the island of Kosrae: evidence for linkage to chromosome 2q

1 reference

12 December 2020

Population stratification in epidemiologic studies of common genetic variants and cancer: quantification of bias

1 reference

12 December 2020

Novel association approach for determining the genetic predisposition to schizophrenia: case-control resource and testing of a candidate gene

1 reference

12 December 2020

Identifiers

DOI

10.1086/432962

1 reference

30 July 2017

1 reference

30 July 2017

1 reference