Quantification of bias related to the extraction of DNA directly from soils (Q33986189)

30 July 2017

title

Quantification of bias related to the extraction of DNA directly from soils (English)

1 reference

30 July 2017

1 reference

A Frostegård

1

1 reference

30 July 2017

S Courtois

2

1 reference

30 July 2017

V Ramisse

3

1 reference

30 July 2017

S Clerc

4

1 reference

30 July 2017

D Bernillon

5

1 reference

30 July 2017

F Le Gall

6

1 reference

30 July 2017

P Jeannin

7

1 reference

30 July 2017

X Nesme

8

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30 July 2017

P Simonet

9

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30 July 2017

language of work or name

English

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publication date

1 December 1999

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Applied and Environmental Microbiology

30 July 2017

published in

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30 July 2017

volume

65

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30 July 2017

issue

12

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30 July 2017

page(s)

5409-5420

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Effects of DNA polymer length on its adsorption to soils

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Development and application of a new method to extract bacterial DNA from soil based on separation of bacteria from soil with cation-exchange resin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

DNA Probe Method for the Detection of Specific Microorganisms in the Soil Bacterial Community

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Separation and purification of bacteria from soil.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

A cobalt-containing medium for sporulation of Streptomyces species

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Monitoring impact of a pesticide treatment on bacterial soil communities by metabolic and genetic fingerprinting in addition to conventional testing procedures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Small-Scale DNA Sample Preparation Method for Field PCR Detection of Microbial Cells and Spores in Soil.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Inhibition and facilitation of nucleic acid amplification

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Isolation of a specific chromosomic DNA sequence of Bacillus anthracis and its possible use in diagnosis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

DNA recovery from soils of diverse composition.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Direct DNA extraction for PCR-mediated assays of soil organisms.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Use of polymerase chain reaction and electroporation of Escherichia coli to monitor the persistence of extracellular plasmid DNA introduced into natural soils.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Molecular marker systems for detection of genetically engineered micro-organisms in the environment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Detection and identification of novel actinomycetes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Quantitative cell lysis of indigenous microorganisms and rapid extraction of microbial DNA from sediment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Analysis of competition in soil among 2,4-dichlorophenoxyacetic acid-degrading bacteria

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Bacterial gene transfer by natural genetic transformation in the environment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Comparison of methods of DNA extraction from stream sediments.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and a yeast

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Phylogenetic identification and in situ detection of individual microbial cells without cultivation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Phylogenetic relationships vs. phenotypic diversity: how to achieve a phylogenetic classification system of the eubacteria

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Recovery of DNA from soils and sediments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

16S rRNA sequences reveal numerous uncultured microorganisms in a natural community

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Rapid method for direct extraction of DNA from soil and sediments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Detection and enumeration of bacteria in soil by direct DNA extraction and polymerase chain reaction

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Viability of soil bacteria: Optimization of plate-counting technique and comparison between total counts and plate counts within different size groups

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Phylogenetic mapping of bacterial morphology

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91737

Direct extraction of microbial community DNA from humified upland soils

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/10583997

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identification of Frankia strains in nodules by hybridization of polymerase chain reaction products with strain-specific oligonucleotide probes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/10583997

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Modifications of the diphenylamine reaction giving increased sensitivity and simplicity in the estimation of DNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/10583997

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

PMC publication ID

91737

1 reference

30 July 2017

1 reference