A pan-cancer proteomic perspective on The Cancer Genome Atlas. (Q33944976)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

title

A pan-cancer proteomic perspective on The Cancer Genome Atlas (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

main subject

The Cancer Genome Atlas

1 reference

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Elena G Seviour

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Prahlad T. Ram

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Steven M Hill

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

17

John V Heymach

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

9

Kosuke Yoshihara

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

29

Gordon B Mills

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

15

Lixia Diao

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

author name string

Rehan Akbani

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Patrick Kwok Shing Ng

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Henrica M J Werner

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Maria Shahmoradgoli

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Fan Zhang

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Zhenlin Ju

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Wenbin Liu

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Ji-Yeon Yang

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Shiyun Ling

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

John D Minna

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Pan Tong

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Frank Dondelinger

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Nicolas Städler

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Lauren A Byers

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

John N Weinstein

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Bradley M Broom

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Roeland G W Verhaak

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Han Liang

26

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Sach Mukherjee

27

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Yiling Lu

28

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Funda Meric-Bernstam

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

language of work or name

English

0 references

publication date

29 May 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

published in

Nature Communications

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

volume

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

page(s)

3887

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

Inferring tumour purity and stromal and immune cell admixture from expression data

19 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Proteomic markers of DNA repair and PI3K pathway activation predict response to the PARP inhibitor BMN 673 in small cell lung cancer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

TCPA: a resource for cancer functional proteomics data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Comprehensive molecular characterization of clear cell renal cell carcinoma

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Integrated genomic characterization of endometrial carcinoma

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

RSK3/4 mediate resistance to PI3K pathway inhibitors in breast cancer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Influence of DNA copy number and mRNA levels on the expression of breast cancer related proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Cytoplasmic Overexpression of HER2: a Key Factor in Colorectal Cancer.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Molecular characterization of basal-like and non-basal-like triple-negative breast cancer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Phase II randomized study of trastuzumab emtansine versus trastuzumab plus docetaxel in patients with human epidermal growth factor receptor 2-positive metastatic breast cancer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Trastuzumab-DM1: a clinical update of the novel antibody-drug conjugate for HER2-overexpressing breast cancer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

The PI3K/AKT/mTOR pathway as a therapeutic target in endometrial cancer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Comprehensive molecular portraits of human breast tumours

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Comprehensive genomic characterization of squamous cell lung cancers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Markers for individualised therapy in endometrial carcinoma

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Comprehensive molecular characterization of human colon and rectal cancer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Specific mutations in KRAS codons 12 and 13, and patient prognosis in 1075 BRAF wild-type colorectal cancers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Differential sensitivity of glioma- versus lung cancer-specific EGFR mutations to EGFR kinase inhibitors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Absolute quantification of somatic DNA alterations in human cancer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

mTOR signaling in growth control and disease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

MYC pathway activation in triple-negative breast cancer is synthetic lethal with CDK inhibition

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

High frequency of PIK3R1 and PIK3R2 mutations in endometrial cancer elucidates a novel mechanism for regulation of PTEN protein stability

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Integrated genomic analyses of ovarian carcinoma

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

A Technical Assessment of the Utility of Reverse Phase Protein Arrays for the Study of the Functional Proteome in Non-microdissected Human Breast Cancers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Molecular Profiling of Colon Tumors: The Search for Clinically Relevant Biomarkers of Progression, Prognosis, Therapeutics, and Predisposition

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Decreased expression and androgen regulation of the tumor suppressor gene INPP4B in prostate cancer.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Towards a knowledge-based Human Protein Atlas

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Direct positive regulation of PTEN by the p85 subunit of phosphatidylinositol 3-kinase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Integrative analysis of proteomic signatures, mutations, and drug responsiveness in the NCI 60 cancer cell line set

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Phase II trial of trastuzumab in women with advanced or recurrent, HER2-positive endometrial carcinoma: a Gynecologic Oncology Group study

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Expression of autotaxin and lysophosphatidic acid receptors increases mammary tumorigenesis, invasion, and metastases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Variable slope normalization of reverse phase protein arrays

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Akt-dependent and -independent mechanisms of mTOR regulation in cancer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Comprehensive genomic characterization defines human glioblastoma genes and core pathways

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Systematic review of HER2 breast cancer testing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Predictive markers in breast cancer--the present

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Sparse inverse covariance estimation with the graphical lasso

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Transcript and protein expression profiles of the NCI-60 cancer cell panel: an integromic microarray study.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

The transferrin receptor part II: targeted delivery of therapeutic agents into cancer cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Overexpression of focal adhesion kinase in head and neck squamous cell carcinoma is independent of fak gene copy number.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Ras, PI(3)K and mTOR signalling controls tumour cell growth

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Gene amplification and protein expression of EGFR and HER2 by chromogenic in situ hybridisation and immunohistochemistry in atypical adenomatous hyperplasia and adenocarcinoma of the lung

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Phosphorylation and functional inactivation of TSC2 by Erk implications for tuberous sclerosis and cancer pathogenesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

Cluster analysis and display of genome-wide expression patterns

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109726

No strong association between HER-2/neu protein overexpression and gene amplification in high-grade invasive urothelial carcinomas.

5 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4887

Her2 amplification is significantly more frequent in lymph node metastases from urothelial bladder cancer than in the primary tumours.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4887

Achieving 95% cross-methodological concordance in HER2 testing: causes and implications of discordant cases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4887

HER-2 gene amplification, HER-2 and epidermal growth factor receptor mRNA and protein expression, and lapatinib efficacy in women with metastatic breast cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4887

HER-2 testing in breast cancer using parallel tissue-based methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4887

Alterations in K-ras, APC and p53-multiple genetic pathway in colorectal cancer among Indians.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4887

High-throughput tissue microarray analysis used to evaluate biology and prognostic significance of the E-cadherin pathway in non-small-cell lung cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4887

Clinical significance of E-cadherin, β-catenin, vimentin and S100A4 expression in completely resected squamous cell lung carcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4887

VHL tumor suppressor gene alterations associated with good prognosis in sporadic clear-cell renal carcinoma

21 January 2018

1 reference

12 December 2020

Her-2/neu overexpression and amplification in uterine papillary serous carcinoma

1 reference

12 December 2020

Integrated gene copy number and expression microarray analysis of gastric cancer highlights potential target genes

1 reference

12 December 2020

Heterogeneity of ERBB2 amplification in adenocarcinoma, squamous cell carcinoma and large cell undifferentiated carcinoma of the lung

1 reference

12 December 2020

The huge Package for High-dimensional Undirected Graph Estimation in R.

1 reference

12 December 2020

The WEKA data mining software: an update

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4887

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NCOMMS4887

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

19 March 2020

ADS bibcode

2014NatCo...5.3887A

0 references

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

PubMed publication ID

24871328

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24871328%20AND%20SRC:MED&resulttype=core&format=json