X-ray scattering combined with coordinate-based analyses for applications in natural and artificial photosynthesis. (Q33938930)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19636808%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

review article

1 reference

title

X-ray scattering combined with coordinate-based analyses for applications in natural and artificial photosynthesis (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19636808%20AND%20SRC:MED&resulttype=core&format=json

X-ray scattering technique

3 February 2020

main subject

photosynthesis

0 references

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19636808%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

Xiaobing Zuo

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19636808%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

author name string

David M Tiede

series ordinal

1

1 reference

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3 February 2020

publication date

1 November 2009

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3 February 2020

published in

Photosynthesis Research

1 reference

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3 February 2020

volume

102

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3 February 2020

issue

2-3

1 reference

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3 February 2020

page(s)

267-279

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19636808%20AND%20SRC:MED&resulttype=core&format=json

Solution-state conformational ensemble of a hexameric porphyrin array characterized using molecular dynamics and X-ray scattering.

3 February 2020

cites work

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Functional tuning of photoactive yellow protein by active site residue 46.

5 July 2018

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Tracking the structural dynamics of proteins in solution using time-resolved wide-angle X-ray scattering

5 July 2018

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Experimental approaches for solution X-ray scattering and fiber diffraction

5 July 2018

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Solution structure of tRNAVal from refinement of homology model against residual dipolar coupling and SAXS data

5 July 2018

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Dynamic charge interactions create surprising rigidity in the ER/K alpha-helical protein motif

5 July 2018

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Simulation-based fitting of protein-protein interaction potentials to SAXS experiments

5 July 2018

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Global molecular structure and interfaces: refining an RNA:RNA complex structure using solution X-ray scattering data

5 July 2018

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X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution

5 July 2018

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On searching in, sampling of, and dynamically moving through conformational space of biomolecular systems: A review

5 July 2018

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Using theory and computation to model nanoscale properties

5 July 2018

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Application of the accelerated molecular dynamics simulations to the folding of a small protein

5 July 2018

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Structural characterization of flexible proteins using small-angle X-ray scattering

5 July 2018

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Characterization of the solution structure of the M intermediate of photoactive yellow protein using high-angle solution x-ray scattering

5 July 2018

1 reference

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The Structure of Free L11 and Functional Dynamics of L11 in Free, L11-rRNA(58 nt) Binary and L11-rRNA(58 nt)-thiostrepton Ternary Complexes

5 July 2018

1 reference

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Small-angle X-ray scattering from RNA, proteins, and protein complexes

5 July 2018

1 reference

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A physical picture of atomic motions within the Dickerson DNA dodecamer in solution derived from joint ensemble refinement against NMR and large-angle X-ray scattering data

5 July 2018

1 reference

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Energy, charge, and spin transport in molecules and self-assembled nanostructures inspired by photosynthesis

5 July 2018

1 reference

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Biomolecular modeling: Goals, problems, perspectives

5 July 2018

1 reference

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Symmetry, form, and shape: guiding principles for robustness in macromolecular machines.

5 July 2018

1 reference

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Influence of the crystalline state on photoinduced dynamics of photoactive yellow protein studied by ultraviolet-visible transient absorption spectroscopy

5 July 2018

1 reference

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X-ray diffraction "fingerprinting" of DNA structure in solution for quantitative evaluation of molecular dynamics simulation

5 July 2018

1 reference

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X-ray scattering of non-crystalline biological systems using synchrotron radiation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2891609

Refinement of multidomain protein structures by combination of solution small-angle X-ray scattering and NMR data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2891609

Ultrafast x-ray diffraction of transient molecular structures in solution.

5 July 2018

1 reference

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Global rigid body modeling of macromolecular complexes against small-angle scattering data

5 July 2018

1 reference

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Coarse-grained models for proteins

5 July 2018

1 reference

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Protein disorder: conformational distribution of the flexible linker in a chimeric double cellulase

5 July 2018

1 reference

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Wide-angle X-ray solution scattering as a probe of ligand-induced conformational changes in proteins

5 July 2018

1 reference

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Synchrotron radiation sources - present capabilities and future directions

5 July 2018

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Hierarchical map of protein unfolding and refolding at thermal equilibrium revealed by wide-angle X-ray scattering.

5 July 2018

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Structural studies of the manganese stabilizing subunit in photosystem II.

5 July 2018

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Addition of missing loops and domains to protein models by x-ray solution scattering

5 July 2018

1 reference

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Protein conformations explored by difference high-angle solution X-ray scattering: oxidation state and temperature dependent changes in cytochrome C.

5 July 2018

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Improving the accuracy of NMR structures of DNA by means of a database potential of mean force describing base-base positional interactions

5 July 2018

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Determination of domain structure of proteins from X-ray solution scattering

5 July 2018

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Functional dynamics of the hydrophobic cleft in the N-domain of calmodulin

5 July 2018

1 reference

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Mimicking photosynthetic solar energy transduction

5 July 2018

1 reference

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Ab initio calculation of electronic coupling in the photosynthetic reaction center

5 July 2018

1 reference

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Structure of a protein photocycle intermediate by millisecond time-resolved crystallography

5 July 2018

1 reference

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Deviations from standard atomic volumes as a quality measure for protein crystal structures

5 July 2018

1 reference

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1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore

5 July 2018

1 reference

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An analysis of current methodologies for conformational searching of complex molecules

5 July 2018

1 reference

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Sampling of slow diffusive conformational transitions with accelerated molecular dynamics

5 July 2018

1 reference

Crossref

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Characterization of protein fold by wide-angle X-ray solution scattering

21 January 2018

1 reference

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Complete structural characterization of metallacyclic complexes in solution-phase using simultaneously X-ray diffraction and molecular dynamics simulation

29 October 2018

1 reference

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X-ray diffraction and DOSY NMR characterization of self-assembled supramolecular metallocyclic species in solution

29 October 2018

1 reference

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Structural characterization of modular supramolecular architectures in solution

29 October 2018

1 reference

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Formation of a new buried charge drives a large-amplitude protein quake in photoreceptor activation

29 October 2018

1 reference

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A target function for quaternary structural refinement from small angle scattering and NMR orientational restraints

29 October 2018

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SaxsMDView: a three-dimensional graphics program for displaying force vectors

29 October 2018

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12 December 2020

Solution-Phase Structural Characterization of Supramolecular Assemblies by Molecular Diffraction

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12 December 2020

Visualizing chemical reactions in solution by picosecond x-ray diffraction

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12 December 2020

Resolving conflicting crystallographic and NMR models for solution-state DNA with solution X-ray diffraction

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12 December 2020

Supramolecular porphyrinic prisms: coordinative assembly and solution phase X-ray structural characterization

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12 December 2020

Exploring multiple timescale motions in protein GB3 using accelerated molecular dynamics and NMR spectroscopy

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12 December 2020

Coordinative Self-Assembly and Solution-Phase X-ray Structural Characterization of Cavity-Tailored Porphyrin Boxes

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12 December 2020

The Protein Data Bank: a computer-based archival file for macromolecular structures

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COCI

https://opencitations.net/index/coci/api/v1/citations/10.1016/S0022-2836(77)80200-3

10.1007/S11120-009-9475-6

5 March 2023

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19636808%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

3 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19636808%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

PubMed publication ID

19636808

1 reference