SORGOdb: Superoxide Reductase Gene Ontology curated DataBase (Q33901415)

29 July 2017

title

SORGOdb: Superoxide Reductase Gene Ontology curated DataBase (English)

1 reference

29 July 2017

0 references

1 reference

David Thybert

3

0 references

author name string

Céline Lucchetti-Miganeh

1

1 reference

29 July 2017

David Goudenège

2

1 reference

29 July 2017

Gilles Salbert

4

1 reference

29 July 2017

Frédérique Barloy-Hubler

5

1 reference

29 July 2017

publication date

16 May 2011

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29 July 2017

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29 July 2017

volume

11

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29 July 2017

page(s)

105

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The biogenesis and physiological function of chloroplast superoxide dismutases

29 July 2017

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5 July 2018

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5 July 2018

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Purification, crystallization and X-ray crystallographic analysis of Archaeoglobus fulgidus neelaredoxin.

5 July 2018

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Superoxide dismutases-a review of the metal-associated mechanistic variations

5 July 2018

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Reductive elimination of superoxide: Structure and mechanism of superoxide reductases.

5 July 2018

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Expression of Pyrococcus furiosus superoxide reductase in Arabidopsis enhances heat tolerance

5 July 2018

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5 July 2018

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O2 and reactive oxygen species detoxification complex, composed of O2-responsive NADH:rubredoxin oxidoreductase-flavoprotein A2-desulfoferrodoxin operon enzymes, rubperoxin, and rubredoxin, in Clostridium acetobutylicum

5 July 2018

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OxyGene: an innovative platform for investigating oxidative-response genes in whole prokaryotic genomes

5 July 2018

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Cellular defenses against superoxide and hydrogen peroxide

5 July 2018

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Desulfoferrodoxin of Clostridium acetobutylicum functions as a superoxide reductase

5 July 2018

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SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

5 July 2018

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Reconsideration of an early dogma, saying "there is no evidence for disulfide bonds in proteins from archaea".

5 July 2018

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Raman-assisted crystallography reveals end-on peroxide intermediates in a nonheme iron enzyme

5 July 2018

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Ignicoccus hospitalis sp. nov., the host of 'Nanoarchaeum equitans'.

5 July 2018

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Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST

5 July 2018

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The Methanosarcina barkeri Genome: Comparative Analysis with Methanosarcina acetivorans and Methanosarcina mazei Reveals Extensive Rearrangement within Methanosarcinal Genomes

5 July 2018

1 reference

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Rubredoxin:oxygen oxidoreductase enhances survival of Desulfovibrio vulgaris hildenborough under microaerophilic conditions

5 July 2018

1 reference

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The first crystal structure of class III superoxide reductase from Treponema pallidum

5 July 2018

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The oxygenation of the atmosphere and oceans

5 July 2018

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Oxygen defense in sulfate-reducing bacteria

5 July 2018

1 reference

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Ignisphaera aggregans gen. nov., sp. nov., a novel hyperthermophilic crenarchaeote isolated from hot springs in Rotorua and Tokaanu, New Zealand

5 July 2018

1 reference

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Prediction of twin-arginine signal peptides

5 July 2018

1 reference

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In vitro reconstitution of an NADPH-dependent superoxide reduction pathway from Pyrococcus furiosus

5 July 2018

1 reference

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Superoxide dismutase evolution and life span regulation

5 July 2018

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Catalase and superoxide dismutase: distribution, properties, and physiological role in cells of strict anaerobes.

5 July 2018

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Circular genome visualization and exploration using CGView

5 July 2018

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MUSCLE: a multiple sequence alignment method with reduced time and space complexity

5 July 2018

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5 July 2018

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Discovery of superoxide reductase: an historical perspective

5 July 2018

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Pathways of Oxidative Damage

5 July 2018

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The genome of a motile marine Synechococcus

5 July 2018

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Nitric oxide binding at the mononuclear active site of reduced Pyrococcus furiosus superoxide reductase

5 July 2018

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The structure of the protein universe and genome evolution

5 July 2018

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Contribution of neelaredoxin to oxygen tolerance by Treponema pallidum

5 July 2018

1 reference

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The mechanism(s) of superoxide reduction by superoxide reductases in vitro and in vivo

5 July 2018

1 reference

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The natural history of protein domains

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116461

A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116461

Superoxide reductase activities of neelaredoxin and desulfoferrodoxin metalloproteins.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116461

Spectroscopic studies of Pyrococcus furiosus superoxide reductase: implications for active-site structures and the catalytic mechanism.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116461

5 July 2018

Earth's early atmosphere

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A fraction of yeast Cu,Zn-superoxide dismutase and its metallochaperone, CCS, localize to the intermembrane space of mitochondria. A physiological role for SOD1 in guarding against mitochondrial oxidative damage.

5 July 2018

1 reference

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Molecular characterization of Desulfovibrio gigas neelaredoxin, a protein involved in oxygen detoxification in anaerobes.

5 July 2018

1 reference

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Key role for sulfur in peptide metabolism and in regulation of three hydrogenases in the hyperthermophilic archaeon Pyrococcus furiosus

5 July 2018

1 reference

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Oxygen detoxification in the strict anaerobic archaeon Archaeoglobus fulgidus: superoxide scavenging by neelaredoxin

5 July 2018

1 reference

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Structures of the superoxide reductase from Pyrococcus furiosus in the oxidized and reduced states

5 July 2018

1 reference

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Reaction of the desulfoferrodoxin from Desulfoarculus baarsii with superoxide anion. Evidence for a superoxide reductase activity

5 July 2018

1 reference

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Anaerobic microbes: oxygen detoxification without superoxide dismutase.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116461

Complete Genome Sequence of an Aerobic Hyper-thermophilic Crenarchaeon, Aeropyrum pernix K1

5 July 2018

1 reference

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Desulfovibrio gigas neelaredoxin. A novel superoxide dismutase integrated in a putative oxygen sensory operon of an anaerobe.

5 July 2018

1 reference

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The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus

5 July 2018

1 reference

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Phylogenetic Perspective on Microbial Life in Hydrothermal Ecosystems, Past and Present

5 July 2018

1 reference

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Reclassification of the Crenarchaeal Orders and Families in Accordance with 16S rRNA Sequence Data

5 July 2018

1 reference

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Overproduction of the rbo gene product from Desulfovibrio species suppresses all deleterious effects of lack of superoxide dismutase in Escherichia coli

5 July 2018

1 reference

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Ferroglobus placidus gen. nov., sp. nov., A novel hyperthermophilic archaeum that oxidizes Fe2+ at neutral pH under anoxic conditions

5 July 2018

1 reference

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A novel nickel-containing superoxide dismutase from Streptomyces spp

5 July 2018

1 reference

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Preliminary crystallographic analysis of the oxidized form of a two mono-nuclear iron centres protein from Desulfovibrio desulfuricans ATCC 27774.

5 July 2018

1 reference

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Using CLUSTAL for multiple sequence alignments

5 July 2018

1 reference

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Primary structure of desulfoferrodoxin from Desulfovibrio desulfuricans ATCC 27774, a new class of non-heme iron proteins.

5 July 2018

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116461

Crystal structure of desulforedoxin from Desulfovibrio gigas determined at 1.8 A resolution: a novel non-heme iron protein structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116461

Superoxide dismutase. An enzymic function for erythrocuprein (hemocuprein)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116461

The production of superoxide anion radicals in the reaction of reduced flavins and flavoproteins with molecular oxygen

5 July 2018

1 reference

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An Enzyme-Based Theory of Obligate Anaerobiosis: The Physiological Function of Superoxide Dismutase

5 July 2018

1 reference

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alpha, beta-Dihydroxyisovalerate dehydratase. A superoxide-sensitive enzyme.

5 July 2018

1 reference

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Microbial superoxide dismutases

5 July 2018

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Basic local alignment search tool

5 July 2018

1 reference

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Purification and characterization of desulfoferrodoxin. A novel protein from Desulfovibrio desulfuricans (ATCC 27774) and from Desulfovibrio vulgaris (strain Hildenborough) that contains a distorted rubredoxin center and a mononuclear ferrous center

5 July 2018

1 reference

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The Darrach procedure defended: technique redefined and long-term follow-up

5 July 2018

1 reference

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Superoxide dismutase in anaerobic bacteria of clinical significance

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116461

A heterocomplex of iron superoxide dismutases defends chloroplast nucleoids against oxidative stress and is essential for chloroplast development in Arabidopsis

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-105

A blue non-heme iron protein from Desulfovibrio gigas

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-105

On the total number of genes and their length distribution in complete microbial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-105

Fe(3+)-eta(2)-peroxo species in superoxide reductase from Treponema pallidum. Comparison with Desulfoarculus baarsii.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-105

A role for rubredoxin in oxidative stress protection in Desulfovibrio vulgaris: catalytic electron transfer to rubrerythrin and two-iron superoxide reductase

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-105

Adaptation of protein secretion to extremely high-salt conditions by extensive use of the twin-arginine translocation pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-105

Identity and functions of CxxC-derived motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-105

Superoxide reductase from Desulfoarculus baarsii: identification of protonation steps in the enzymatic mechanism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-105

Identification of iron(III) peroxo species in the active site of the superoxide reductase SOR from Desulfoarculus baarsii

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-105

Fe3+-hydroxide ligation in the superoxide reductase from Desulfoarculus baarsii is associated with pH dependent spectral changes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-105

Mössbauer characterization of an unusual high-spin side-on peroxo-Fe3+ species in the active site of superoxide reductase from Desulfoarculus Baarsii. Density functional calculations on related models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-105

Redox-dependent structural changes in the superoxide reductase from Desulfoarculus baarsii and Treponema pallidum: a FTIR study

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-105

Resonance Raman characterization of the mononuclear iron active-site vibrations and putative electron transport pathways in Pyrococcus furiosus superoxide reductase

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-105

Overexpression and purification of Treponema pallidum rubredoxin; kinetic evidence for a superoxide-mediated electron transfer with the superoxide reductase neelaredoxin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-105

Superoxide reductase from Desulfoarculus baarsii: reaction mechanism and role of glutamate 47 and lysine 48 in catalysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-105

The mechanism of superoxide scavenging by Archaeoglobus fulgidus neelaredoxin

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-105

Spectroscopic characterization of the [Fe(His)(4)(Cys)] site in 2Fe-superoxide reductase from Desulfovibrio vulgaris.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-105

Kinetics and mechanism of superoxide reduction by two-iron superoxide reductase from Desulfovibrio vulgaris

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-105

Superoxide reduction by Nanoarchaeum equitans neelaredoxin, an enzyme lacking the highly conserved glutamate iron ligand

21 January 2018

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Resonance Raman study of the superoxide reductase from Archaeoglobus fulgidus, E12 mutants and a 'natural variant'.

21 January 2018

1 reference

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Superoxide reductase from the syphilis spirochete Treponema pallidum: crystallization and structure determination using soft X-rays

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116461

Neelaredoxin, an iron-binding protein from the syphilis spirochete, Treponema pallidum, is a superoxide reductase.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116461

Cloning and expression of the rubredoxin gene from Desulfovibrio vulgaris (Miyazaki F)--comparison of the primary structure of desulfoferrodoxin.

29 October 2018

1 reference

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The inactivation of Fe-S cluster containing hydro-lyases by superoxide.

29 October 2018

1 reference

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Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion upon X-Ray-Induced Photo-Reduction

29 October 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-105

The superoxide dismutase activity of desulfoferrodoxin from Desulfovibrio desulfuricans ATCC 27774

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-105

Photochemical processes observed during the reaction of superoxide reductase from Desulfoarculus baarsii with superoxide: re-evaluation of the reaction mechanism

21 January 2018

1 reference

12 December 2020

Superoxide reductase from Desulfoarculus baarsii

1 reference

12 December 2020

Spectroscopic properties of desulfoferrodoxin from Desulfovibrio desulfuricans (ATCC 27774)

1 reference

12 December 2020

Unique isozymes of superoxide dismutase in Streptomyces griseus

1 reference

12 December 2020

A Mechanism for Complementation of the sodA sodBDefect in Escherichia coli by Overproduction of the rbo Gene Product (Desulfoferrodoxin) from Desulfoarculus baarsii

1 reference

12 December 2020

Superoxide reduction mechanism of Archaeoglobus fulgidus one-iron superoxide reductase

1 reference

12 December 2020

Superoxide reduction by Archaeoglobus fulgidus desulfoferrodoxin: comparison with neelaredoxin

1 reference

12 December 2020

Formation of a Stable Cyano-Bridged Dinuclear Iron Cluster Following Oxidation of the Superoxide Reductases fromTreponemapallidumandDesulfovibriovulgariswith K3Fe(CN)6‡

1 reference

12 December 2020

Assessing the Role of the Active-site Cysteine Ligand in the Superoxide Reductase fromDesulfoarculus baarsii

1 reference

12 December 2020

Reaction of Desulfovibrio vulgaris two-iron superoxide reductase with superoxide: insights from stopped-flow spectrophotometry

1 reference

12 December 2020

Methanoferrodoxin represents a new class of superoxide reductase containing an iron-sulfur cluster

1 reference

12 December 2020

Superoxide reductase as a unique defense system against superoxide stress in the microaerophile Treponema pallidum

1 reference

12 December 2020

Pulse radiolysis studies on superoxide reductase from Treponema pallidum

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2180-11-105

1 reference

Dimensions Publication ID

29 July 2017

0 references

0 references

1 reference

29 July 2017

1 reference