Using ion mobility data to improve peptide identification: intrinsic amino acid size parameters (Q33850030)

29 July 2017

title

Using ion mobility data to improve peptide identification: intrinsic amino acid size parameters (English)

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electrophoretic mobility data

29 July 2017

main subject

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Jonathan M Dilger

3

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Michael A Ewing

object named as

Michael A Ewing

2

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author name string

Stephen J Valentine

1

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29 July 2017

Matthew S Glover

4

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29 July 2017

Scott Geromanos

5

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29 July 2017

Chris Hughes

6

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29 July 2017

David E Clemmer

7

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29 July 2017

publication date

1 April 2011

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Journal of Proteome Research

29 July 2017

published in

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29 July 2017

volume

10

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29 July 2017

issue

5

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29 July 2017

page(s)

2318-2329

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Biomolecule analysis by ion mobility spectrometry

29 July 2017

cites work

1 reference

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28 July 2018

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Comparison of database search strategies for high precursor mass accuracy MS/MS data

28 July 2018

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Multidimensional protein fractionation of blood proteins coupled to data-independent nanoLC-MS/MS analysis

28 July 2018

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Predicting intensity ranks of peptide fragment ions

28 July 2018

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Precision proteomics: the case for high resolution and high mass accuracy

28 July 2018

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Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification

28 July 2018

1 reference

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What's driving false discovery rates?

28 July 2018

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Mapping the human plasma proteome by SCX-LC-IMS-MS

28 July 2018

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A mass accuracy sensitive probability based scoring algorithm for database searching of tandem mass spectrometry data

28 July 2018

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Lookup peaks: a hybrid of de novo sequencing and database search for protein identification by tandem mass spectrometry

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Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database

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High-sensitivity ion mobility spectrometry/mass spectrometry using electrodynamic ion funnel interfaces

28 July 2018

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An improved model for prediction of retention times of tryptic peptides in ion pair reversed-phase HPLC: its application to protein peptide mapping by off-line HPLC-MALDI MS.

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Nanoflow LC/ion mobility/CID/TOF for proteomics: analysis of a human urinary proteome

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Deriving statistical models for predicting peptide tandem MS product ion intensities

28 July 2018

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Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome

28 July 2018

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Resolving isomeric peptide mixtures: a combined HPLC/ion mobility-TOFMS analysis of a 4000-component combinatorial library

28 July 2018

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Ion trap/ion mobility/quadrupole/time-of-flight mass spectrometry for peptide mixture analysis

28 July 2018

1 reference

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28 July 2018

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A database of 660 peptide ion cross sections: use of intrinsic size parameters for bona fide predictions of cross sections

28 July 2018

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Three-Dimensional Ion Mobility/TOFMS Analysis of Electrosprayed Biomolecules

28 July 2018

1 reference

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28 July 2018

1 reference

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Protein sequencing by tandem mass spectrometry

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138335

Artificial neural networks for the prediction of peptide drift time in ion mobility mass spectrometry

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138335

Using statistical models to identify factors that have a role in defining the abundance of ions produced by tandem MS.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138335

Neural network prediction of peptide separation in strong anion exchange chromatography

29 October 2018

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An IMS-IMS analogue of MS-MS.

29 October 2018

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PepHMM: a hidden Markov model based scoring function for mass spectrometry database search.

29 October 2018

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Prediction of low-energy collision-induced dissociation spectra of peptides with three or more charges

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Mapping the proteome of Drosophila melanogaster: analysis of embryos and adult heads by LC-IMS-MS methods

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InsPecT: identification of posttranslationally modified peptides from tandem mass spectra

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PepNovo: de novo peptide sequencing via probabilistic network modeling

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1 reference

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Prediction of low-energy collision-induced dissociation spectra of peptides

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29 October 2018

1 reference

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29 October 2018

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Large-scale analysis of the yeast proteome by multidimensional protein identification technology

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1 reference

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1 reference

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Characterizing Oligosaccharides Using Injected-Ion Mobility/Mass Spectrometry

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Empirical approach to false discovery rate estimation in shotgun proteomics

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Peptide fragment intensity statistical modeling

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Prediction of Chromatographic Retention and Protein Identification in Liquid Chromatography/Mass Spectrometry

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Quantitative proteomic analysis by accurate mass retention time pairs

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Identifiers

DOI

10.1021/PR1011312

1 reference

29 July 2017

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29 July 2017

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