pBAM1: an all-synthetic genetic tool for analysis and construction of complex bacterial phenotypes. (Q33826810)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21342504%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

title

pBAM1: an all-synthetic genetic tool for analysis and construction of complex bacterial phenotypes (English)

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23 January 2020

4

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23 January 2020

Esteban Martínez-García

series ordinal

1

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23 January 2020

author name string

Belén Calles

series ordinal

2

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23 January 2020

Miguel Arévalo-Rodríguez

series ordinal

3

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23 January 2020

publication date

22 February 2011

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23 January 2020

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23 January 2020

volume

11

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23 January 2020

page(s)

38

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21342504%20AND%20SRC:MED&resulttype=core&format=json

Identification of conditionally essential genes for growth of Pseudomonas putida KT2440 on minimal medium through the screening of a genome-wide mutant library.

23 January 2020

cites work

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Transposon assisted gene insertion technology (TAGIT): a tool for generating fluorescent fusion proteins

4 July 2018

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Versatile dual-technology system for markerless allele replacement in Burkholderia pseudomallei

4 July 2018

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Coordinating assembly of a bacterial macromolecular machine

4 July 2018

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The coordinate regulation of multiple terminal oxidases by the Pseudomonas putida ANR global regulator.

4 July 2018

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Rho-dependent terminators and transcription termination

4 July 2018

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Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes

4 July 2018

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Real-time kinetics of gene activity in individual bacteria

4 July 2018

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A Tn7-based broad-range bacterial cloning and expression system

4 July 2018

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Promoters in the environment: transcriptional regulation in its natural context

4 July 2018

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A faster way to make GFP-based biosensors: two new transposons for creating multicolored libraries of fluorescent fusion proteins

4 July 2018

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WebLogo: A Sequence Logo Generator

4 July 2018

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Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440

4 July 2018

1 reference

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Conjugation between bacterial and mammalian cells

4 July 2018

1 reference

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Genetic analysis of functions involved in adhesion of Pseudomonas putida to seeds.

4 July 2018

1 reference

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Implication of gene distribution in the bacterial chromosome for the bacterial cell factory

4 July 2018

1 reference

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Compartmentalization of transcription and translation in Bacillus subtilis

4 July 2018

1 reference

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Insertional transposon mutagenesis by electroporation of released Tn5 transposition complexes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056738

Tn5/IS50 target recognition.

4 July 2018

1 reference

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A stationary phase protein in Escherichia coli with binding activity to the major σ subunit of RNA polymerase

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056738

Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056738

An improved GFP cloning cassette designed for prokaryotic transcriptional fusions

4 July 2018

1 reference

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Modulation of gene expression through chromosomal positioning in Escherichia coli.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056738

Analysis and construction of stable phenotypes in gram-negative bacteria with Tn5- and Tn10-derived minitransposons

4 July 2018

1 reference

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Plasmid R6K DNA replication. II. Direct nucleotide sequence repeats are required for an active gamma-origin.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056738

Nucleotide sequence of the kanamycin resistance transposon Tn903

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056738

Precise location of two promoters for the beta-lactamase gene of pBR322. S1 mapping of ribonucleic acid isolated from Escherichia coli or synthesized in vitro

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056738

Localization of action of the IS50-encoded transposase protein.

4 July 2018

1 reference

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Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors

4 July 2018

1 reference

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Transposon Tn5 target specificity: preference for insertion at G/C pairs

4 July 2018

1 reference

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A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR

4 July 2018

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Bacterial conjugative plasmids mobilize DNA transfer between bacteria and yeast

4 July 2018

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Involvement of Pseudomonas putida RpoN sigma factor in regulation of various metabolic functions

4 July 2018

1 reference

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Effect of dam methylation on Tn5 transposition

4 July 2018

1 reference

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A totally synthetic plasmid for general cloning, gene expression and mutagenesis in Escherichia coli

4 July 2018

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Mini-Tn5 transposon derivatives for insertion mutagenesis, promoter probing, and chromosomal insertion of cloned DNA in gram-negative eubacteria

4 July 2018

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Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria

4 July 2018

1 reference

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Molecular and functional characterization of a carbon starvation gene of Escherichia coli

4 July 2018

1 reference

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Escherichia coli DnaJ and GrpE heat shock proteins jointly stimulate ATPase activity of DnaK

4 July 2018

1 reference

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Uniform nomenclature for bacterial plasmids: a proposal

4 July 2018

1 reference

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Trans-complementation-dependent replication of a low molecular weight origin fragment from plasmid R6K

4 July 2018

1 reference

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Construction and characterization of new cloning vehicle. II. A multipurpose cloning system

4 July 2018

1 reference

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4 July 2018

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Plasmid R6K DNA replication. I. Complete nucleotide sequence of an autonomously replicating segment

21 January 2018

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Conjugative transfer of RP4-oriT shuttle vectors from Escherichia coli to Clostridium perfringens.

21 January 2018

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Construction of a mariner-based transposon for epitope-tagging and genomic targeting.

21 January 2018

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Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440.

21 January 2018

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Insights into the genomic basis of niche specificity of Pseudomonas putida KT2440.

21 January 2018

1 reference

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An improved arbitrary primed PCR method for rapid characterization of transposon insertion sites.

21 January 2018

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Activation of the transcriptional regulator XylR of Pseudomonas putida by release of repression between functional domains.

21 January 2018

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A 10-min method for preparation of highly electrocompetent Pseudomonas aeruginosa cells: application for DNA fragment transfer between chromosomes and plasmid transformation.

21 January 2018

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Specific-purpose plasmid cloning vectors II. Broad host range, high copy number, RSF 1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas

21 January 2018

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Tn5 in Vitro Transposition

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21342504

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Molecular genetic analysis of transposase-end DNA sequence recognition: cooperativity of three adjacent base-pairs in specific interaction with a mutant Tn5 transposase

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21342504

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Genetic analysis of Escherichia coli biofilm formation: roles of flagella, motility, chemotaxis and type I pili

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21342504

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2180-11-38

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21342504%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

23 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21342504%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

PubMed publication ID

21342504

1 reference