Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes (Q33771199)

29 July 2017

title

Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes (English)

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29 July 2017

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11

Jorge Dubcovsky

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29 July 2017

12

Bikram S Gill

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29 July 2017

Peter L Morrell

22

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Gerard Lazo

object named as

Gerard R Lazo

17

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Jan Dvorak

32

object named as

Jan Dvorak

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29 July 2017

Marilyn L Warburton

29

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ORCID Public Data File 2021

Olin D Anderson

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object named as

Olin D Anderson

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29 July 2017

1

Eduard D Akhunov

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29 July 2017

2

Alina R Akhunova

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29 July 2017

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Ming-Cheng Luo

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29 July 2017

26

Luther E Talbert

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29 July 2017

30

Frank M You

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29 July 2017

James A Anderson

4

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29 July 2017

Nancy Blake

5

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29 July 2017

Michael T Clegg

6

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29 July 2017

Devin Coleman-Derr

7

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29 July 2017

Emily J Conley

8

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29 July 2017

Curt C Crossman

9

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29 July 2017

Karin R Deal

10

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29 July 2017

Yong Q Gu

13

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29 July 2017

Jakub Hadam

14

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29 July 2017

Hwayoung Heo

15

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29 July 2017

Naxin Huo

16

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29 July 2017

Yaqin Q Ma

19

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29 July 2017

David E Matthews

20

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29 July 2017

Patrick E McGuire

21

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29 July 2017

Calvin O Qualset

23

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29 July 2017

James Renfro

24

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29 July 2017

Dindo Tabanao

25

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29 July 2017

Chao Tian

27

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29 July 2017

Donna M Toleno

28

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29 July 2017

Wenjun Zhang

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29 July 2017

language of work or name

English

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publication date

14 December 2010

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29 July 2017

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29 July 2017

volume

11

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29 July 2017

page(s)

702

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ConservedPrimers 2.0: a high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery

29 July 2017

cites work

1 reference

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Genome comparisons reveal a dominant mechanism of chromosome number reduction in grasses and accelerated genome evolution in Triticeae.

4 July 2018

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Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay

4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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Wheat: Reconstitution of the Tetraploid Component (AABB) of Hexaploids

4 July 2018

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The structure of wild and domesticated emmer wheat populations, gene flow between them, and the site of emmer domestication

4 July 2018

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Nonstructural Chromosome Differentiation among Wheat Cultivars, with Special Reference to Differentiation of Chromosomes in Related Species

4 July 2018

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Genomic Instability in Wheat Induced by Chromosome 6b(s) of Triticum Speltoides.

4 July 2018

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4 July 2018

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Discovery and mapping of wheat Ph1 suppressors

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Molecular characterization of a diagnostic DNA marker for domesticated tetraploid wheat provides evidence for gene flow from wild tetraploid wheat to hexaploid wheat

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Estimating the contribution of mutation, recombination and gene conversion in the generation of haplotypic diversity

4 July 2018

1 reference

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Gene evolution at the ends of wheat chromosomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Automating sequence-based detection and genotyping of SNPs from diploid samples

4 July 2018

1 reference

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Tempos of gene locus deletions and duplications and their relationship to recombination rate during diploid and polyploid evolution in the Aegilops-Triticum alliance

4 July 2018

1 reference

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Low levels of linkage disequilibrium in wild barley (Hordeum vulgare ssp. spontaneum) despite high rates of self-fertilization

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Deletion polymorphism in wheat chromosome regions with contrasting recombination rates

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

A chromosome bin map of 16,000 expressed sequence tag loci and distribution of genes among the three genomes of polyploid wheat.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

A chromosome bin map of 2148 expressed sequence tag loci of wheat homoeologous group 7.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Deletion mapping of homoeologous group 6-specific wheat expressed sequence tags

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

A 2500-locus bin map of wheat homoeologous group 5 provides insights on gene distribution and colinearity with rice

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Analysis of expressed sequence tag loci on wheat chromosome group 4

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Group 3 chromosome bin maps of wheat and their relationship to rice chromosome 1.

4 July 2018

1 reference

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A 2600-locus chromosome bin map of wheat homoeologous group 2 reveals interstitial gene-rich islands and colinearity with rice.

4 July 2018

1 reference

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Chromosome bin map of expressed sequence tags in homoeologous group 1 of hexaploid wheat and homoeology with rice and Arabidopsis.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Development of an expressed sequence tag (EST) resource for wheat (Triticum aestivum L.): EST generation, unigene analysis, probe selection and bioinformatics for a 16,000-locus bin-delineated map.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Sequence polymorphism in polyploid wheat and their d-genome diploid ancestor

4 July 2018

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

4 July 2018

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The allele frequency spectrum in genome-wide human variation data reveals signals of differential demographic history in three large world populations

4 July 2018

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Does recombination shape the distribution and evolution of tandemly arrayed genes (TAGs) in the Arabidopsis thaliana genome?

4 July 2018

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4 July 2018

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Synteny perturbations between wheat homoeologous chromosomes caused by locus duplications and deletions correlate with recombination rates

4 July 2018

1 reference

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The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms

4 July 2018

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Single-nucleotide polymorphisms in soybean

4 July 2018

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SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines

4 July 2018

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Identification, analysis, and utilization of conserved ortholog set markers for comparative genomics in higher plants

4 July 2018

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Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of the Triticum/Aegilops complex and the evolutionary history of polyploid wheat

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Generating samples under a Wright-Fisher neutral model of genetic variation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Breeding systems and genome evolution

4 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Variation in repeated nucleotide sequences sheds light on the phylogeny of the wheat B and G genomes

4 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Primer3 on the WWW for general users and for biologist programmers

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Restriction fragment length polymorphism and divergence in the genomic regions of high and low recombination in self-fertilizing and cross-fertilizing aegilops species

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Genetic map of diploid wheat, Triticum monococcum L., and its comparison with maps of Hordeum vulgare L

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

The hitchhiking effect on the site frequency spectrum of DNA polymorphisms.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Evolutionary relationship of DNA sequences in finite populations

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

DNA polymorphism detectable by restriction endonucleases

4 July 2018

1 reference

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The hitch-hiking effect of a favourable gene

4 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

4 July 2018

12 December 2020

Analysis of any point mutation in DNA. The amplification refractory mutation system (ARMS)

1 reference

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Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster

4 July 2018

1 reference

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On the number of segregating sites in genetical models without recombination

4 July 2018

1 reference

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Electrophoretic survey of seedling esterases in wheats in relation to their phylogeny

4 July 2018

1 reference

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Grinding up wheat: a massive loss of nucleotide diversity since domestication

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Complex genome rearrangements reveal evolutionary dynamics of pericentromeric regions in the Triticeae

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Single-nucleotide polymorphism frequency in a set of selected lines of bread wheat (Triticum aestivum L.).

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

The effects of artificial selection on the maize genome

30 October 2018

1 reference

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A reconsideration of the domestication geography of tetraploid wheats.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Genome-specific primer sets for starch biosynthesis genes in wheat

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Linkage disequilibrium, gene trees and selfing: an ancestral recombination graph with partial self-fertilization

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Independent Wheat B and G Genome Origins in Outcrossing Aegilops Progenitor Haplotypes

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022916

Structural evolution of wheat chromosomes 4A, 5A, and 7B and its impact on recombination

30 October 2018

1 reference

12 December 2020

NAD-dependent aromatic alcohol dehydrogenase in wheats (Triticum L.) and goatgrasses (Aegilops L.): evolutionary genetics

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12 December 2020

Molecular-genetic maps for group 1 chromosomes of Triticeae species and their relation to chromosomes in rice and oat

1 reference

12 December 2020

Variability and genetics of spacer DNA sequences between the ribosomal-RNA genes of hexaploid wheat (Triticum aestivum)

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12 December 2020

Molecular characterization of a set of wheat deletion stocks for use in chromosome bin mapping of ESTs

1 reference

12 December 2020

The evolution of polyploid wheats: identification of the A genome donor species

1 reference

12 December 2020

Engineering of interstitial foreign chromosome segments containing the K(+)/Na (+) selectivity gene Kna1 by sequential homoeologous recombination in durum wheat

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12 December 2020

Multiplex single nucleotide polymorphism (SNP)-based genotyping in allohexaploid wheat using padlock probes

1 reference

12 December 2020

PCR-mediated recombination in amplification products derived from polyploid cotton

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12 December 2020

The origin of Triticum spelta and its free-threshing hexaploid relatives

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12 December 2020

A cytogenetic ladder-map of the wheat homoeologous group-4 chromosomes

1 reference

12 December 2020

Mining single-nucleotide polymorphisms from hexaploid wheat ESTs

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12 December 2020

Genome sequencing and analysis of the model grass Brachypodium distachyon

1 reference

COCI

https://opencitations.net/index/coci/api/v1/citations/10.1038/NATURE08747

15 July 2023

Identifiers

DOI

10.1186/1471-2164-11-702

1 reference

Dimensions Publication ID

29 July 2017

0 references

1 reference

29 July 2017

1 reference