Kraken: ultrafast metagenomic sequence classification using exact alignments (Q33742022)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24580807%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

title

Kraken: ultrafast metagenomic sequence classification using exact alignments (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24580807%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

0 references

1 reference

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1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24580807%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

Steven Salzberg

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24580807%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

author name string

Derrick E Wood

series ordinal

1

1 reference

PubMed publication ID

24580807

29 July 2017

publication date

3 March 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24580807%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24580807%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

volume

15

1 reference

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9 March 2020

issue

3

1 reference

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9 March 2020

page(s)

R46

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24580807%20AND%20SRC:MED&resulttype=core&format=json

The MaSuRCA genome assembler

9 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053813

Scalable metagenomic taxonomy classification using a reference genome database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053813

GAGE-B: an evaluation of genome assemblers for bacterial organisms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053813

MetAMOS: a modular and open source metagenomic assembly and analysis pipeline

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053813

Metagenomic microbial community profiling using unique clade-specific marker genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053813

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053813

Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053813

Interactive metagenomic visualization in a Web browser

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053813

PhymmBL expanded: confidence scores, custom databases, parallelization and more

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053813

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053813

BLAST+: architecture and applications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053813

Metagenome fragment classification using N-mer frequency profiles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053813

Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053813

MEGAN analysis of metagenomic data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053813

Environmental genome shotgun sequencing of the Sargasso Sea

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053813

Community structure and metabolism through reconstruction of microbial genomes from the environment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053813

Ecology of Haemophilus influenzae and Haemophilus parainfluenzae in sputum and saliva and effects of antibiotics on their distribution in patients with lower respiratory tract infections

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053813

Basic local alignment search tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053813

Structure, function and diversity of the healthy human microbiome

21 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2014-15-3-R46

Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2014-15-3-R46

Salivary proteins promote proteolytic activity in Streptococcus mitis biovar 2 and Streptococcus mutans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2014-15-3-R46

Reducing storage requirements for biological sequence comparison.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2014-15-3-R46

Transmission of oral Prevotella melaninogenica between a mother and her young child

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24580807

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2014-15-3-R46

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24580807%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

9 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24580807%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

PubMed publication ID

24580807

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24580807%20AND%20SRC:MED&resulttype=core&format=json