Real-time observation of the transition from transcription initiation to elongation of the RNA polymerase (Q33564189)

28 July 2017

title

Real-time observation of the transition from transcription initiation to elongation of the RNA polymerase (English)

1 reference

28 July 2017

Rahul Roy

2

0 references

Taekjip Ha

object named as

Taekjip Ha

series ordinal

4

0 references

Rajiv P Bandwar

series ordinal

3

object named as

Rajiv P Bandwar

1 reference

28 July 2017

Guo-Qing Tang

1

1 reference

28 July 2017

Smita S Patel

series ordinal

5

1 reference

28 July 2017

language of work or name

English

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publication date

11 December 2009

1 reference

Proceedings of the National Academy of Sciences of the United States of America

28 July 2017

published in

1 reference

28 July 2017

volume

106

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28 July 2017

issue

52

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28 July 2017

page(s)

22175-22180

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Global kinetic explorer: a new computer program for dynamic simulation and fitting of kinetic data

28 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

The structure of a transcribing T7 RNA polymerase in transition from initiation to elongation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

Transcription initiation in a single-subunit RNA polymerase proceeds through DNA scrunching and rotation of the N-terminal subdomains.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

A practical guide to single-molecule FRET

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

Prevalence of RNA polymerase stalling at Escherichia coli promoters after open complex formation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

RNA polymerase is poised for activation across the genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

Sigma and RNA polymerase: an on-again, off-again relationship?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

Initial bubble collapse plays a key role in the transition to elongation in T7 RNA polymerase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

Structure of a T7 RNA polymerase elongation complex at 2.9 A resolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

Promoter clearance and escape in prokaryotes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

T7 promoter release mediated by DNA scrunching

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

A step subsequent to preinitiation complex assembly at the ribosomal RNA gene promoter is rate limiting for human RNA polymerase I-dependent transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

Structure of a transcribing T7 RNA polymerase initiation complex

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

Structural basis for initiation of transcription from an RNA polymerase-promoter complex

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

Studies of contacts between T7 RNA polymerase and its promoter reveal features in common with multisubunit RNA polymerases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

Single-molecule fluorescence spectroscopy of enzyme conformational dynamics and cleavage mechanism.

21 June 2018

1 reference

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Kinetic Mechanism of GTP Binding and RNA Synthesis during Transcription Initiation by Bacteriophage T7 RNA Polymerase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

Transcriptional activation by recruitment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

Kinetic mechanism of transcription initiation by bacteriophage T7 RNA polymerase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

Recycling of the general transcription factors during RNA polymerase II transcription

21 June 2018

1 reference

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Cloning and expression of the gene for bacteriophage T7 RNA polymerase

21 June 2018

1 reference

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Rate-limiting steps in RNA chain initiation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

T7 lysozyme inhibits transcription by T7 RNA polymerase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

Interactions of the RNA polymerase of bacteriophage T7 with its promoter during binding and initiation of transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

The RNA polymerase II molecule at the 5' end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

Escherichia coli sigma 70 and NusA proteins. I. Binding interactions with core RNA polymerase in solution and within the transcription complex

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799739

The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting.

21 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0906979106

Promoter clearance by T7 RNA polymerase. Initial bubble collapse and transcript dissociation monitored by base analog fluorescence

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0906979106

The +2 NTP binding drives open complex formation in T7 RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0906979106

Mechanisms by which T7 lysozyme specifically regulates T7 RNA polymerase during different phases of transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0906979106

T7 lysozyme represses T7 RNA polymerase transcription by destabilizing the open complex during initiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0906979106

Extended upstream A-T sequence increases T7 promoter strength

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0906979106

Cyclic Re-use of the RNA Polymerase Sigma Factor

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0906979106

Cycling of ribonucleic acid polymerase to produce oligonucleotides during initiation in vitro at the lac UV5 promoter

21 January 2018

1 reference

12 December 2020

Role of the sigma subunit of Escherichia coli RNA polymerase in initiation. II. Release of sigma from ternary complexes

1 reference

12 December 2020

Equilibrium and stopped-flow kinetic studies of interaction between T7 RNA polymerase and its promoters measured by protein and 2-aminopurine fluorescence changes

1 reference

12 December 2020

Mechanism of inhibition of bacteriophage T7 RNA polymerase by T7 lysozyme

1 reference

12 December 2020

Weakening of the T7 promoter-polymerase interaction facilitates promoter release

1 reference

12 December 2020

Major conformational changes during T7RNAP transcription initiation coincide with, and are required for, promoter release

1 reference

12 December 2020

T7 RNA polymerase-induced bending of promoter DNA is coupled to DNA opening

1 reference

12 December 2020

Rapid binding of T7 RNA polymerase is followed by simultaneous bending and opening of the promoter DNA

1 reference

12 December 2020

Sequential release of promoter contacts during transcription initiation to elongation transition

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0906979106

1 reference

28 July 2017

0 references

1 reference

28 July 2017

1 reference