Molecular dynamics of the proline switch and its role in Crk signaling (Q33558265)

28 July 2017

title

Molecular dynamics of the proline switch and its role in Crk signaling (English)

1 reference

28 July 2017

Junchao Xia

1

0 references

author name string

Ronald M Levy

series ordinal

2

1 reference

28 July 2017

language of work or name

English

0 references

publication date

16 April 2014

1 reference

Journal of Physical Chemistry B

28 July 2017

published in

1 reference

28 July 2017

volume

118

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28 July 2017

issue

17

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28 July 2017

page(s)

4535-4545

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Locking the active conformation of c-Src kinase through the phosphorylation of the activation loop

28 July 2017

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Crk and CrkL present with different expression and significance in epithelial ovarian carcinoma

21 June 2018

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Structural basis for regulation of the Crk signaling protein by a proline switch

21 June 2018

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21 June 2018

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21 June 2018

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Crk and CrkL adaptor proteins: networks for physiological and pathological signaling

21 June 2018

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21 June 2018

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Mechanism of action of cyclophilin a explored by metadynamics simulations

21 June 2018

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21 June 2018

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21 June 2018

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A new twist to adaptor proteins contributes to regulation of lymphocyte cell signaling

21 June 2018

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21 June 2018

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Probing polyproline structure and dynamics by photoinduced electron transfer provides evidence for deviations from a regular polyproline type II helix.

21 June 2018

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Prolyl cis-trans isomerization as a molecular timer

21 June 2018

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A 10-A spectroscopic ruler applied to short polyprolines

21 June 2018

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Structural basis for the transforming activity of human cancer-related signaling adaptor protein CRK

21 June 2018

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21 June 2018

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21 June 2018

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Proline cis-trans isomerization controls autoinhibition of a signaling protein

21 June 2018

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21 June 2018

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The free energy landscape of small peptides as obtained from metadynamics with umbrella sampling corrections

21 June 2018

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21 June 2018

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Conformational preferences of non-prolyl and prolyl residues.

21 June 2018

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Comparison of multiple Amber force fields and development of improved protein backbone parameters

21 June 2018

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Proline isomerization of histone H3 regulates lysine methylation and gene expression

21 June 2018

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Conformational preferences of proline oligopeptides.

21 June 2018

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Solution structure and folding characteristics of the C-terminal SH3 domain of c-Crk-II.

21 June 2018

1 reference

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The prolyl isomerase Pin1 regulates amyloid precursor protein processing and amyloid-beta production

21 June 2018

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Structural basis for the requirement of two phosphotyrosine residues in signaling mediated by Syk tyrosine kinase

21 June 2018

1 reference

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Cis-trans isomerization at a proline opens the pore of a neurotransmitter-gated ion channel.

21 June 2018

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Phosphorylation-specific prolyl isomerization: is there an underlying theme?

21 June 2018

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Protein dynamics and enzymatic catalysis: investigating the peptidyl-prolyl cis-trans isomerization activity of cyclophilin A.

21 June 2018

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Native state proline isomerization: an intrinsic molecular switch

21 June 2018

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Cis-trans isomerization of organic molecules and biomolecules: implications and applications

21 June 2018

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An electronic effect on protein structure.

21 June 2018

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Structural insights into the catalytic mechanism of cyclophilin A

21 June 2018

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Escaping free-energy minima

21 June 2018

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Regulation of the tyrosine kinase Itk by the peptidyl-prolyl isomerase cyclophilin A

21 June 2018

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Crk family adaptors-signalling complex formation and biological roles

21 June 2018

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Enzymes that catalyse the restructuring of proteins

21 June 2018

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21 June 2018

Peptide bonds revisited

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c-Abl kinase regulates the protein binding activity of c-Crk

21 June 2018

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Four proline-rich sequences of the guanine-nucleotide exchange factor C3G bind with unique specificity to the first Src homology 3 domain of Crk

21 June 2018

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Direct demonstration of an intramolecular SH2-phosphotyrosine interaction in the Crk protein

21 June 2018

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21 June 2018

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21 June 2018

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How does Pin1 catalyze the cis-trans prolyl peptide bond isomerization? A QM/MM and mean reaction force study.

21 June 2018

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A classical molecular dynamics investigation of the free energy and structure of short polyproline conformers

31 October 2018

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Reoptimization of the AMBER force field parameters for peptide bond (Omega) torsions using accelerated molecular dynamics

31 October 2018

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Quantum mechanical and NMR studies of ring puckering and cis/trans-rotameric interconversion in prolines and hydroxyprolines

31 October 2018

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Substrate binding mechanism of HIV-1 protease from explicit-solvent atomistic simulations.

31 October 2018

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Reconstructing the equilibrium Boltzmann distribution from well-tempered metadynamics.

31 October 2018

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Intra- and intermolecular interaction inducing pyramidalization on both sides of a proline dipeptide during isomerization: an ab initio QM/MM molecular dynamics simulation study in explicit water

31 October 2018

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NMR and theoretical calculations: a unified view of the cis/trans isomerization of 2-substituted thiazolidines containing peptides

31 October 2018

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Force-induced prolyl cis-trans isomerization in elastin-like polypeptides

31 October 2018

1 reference

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Cyclophilin A binds to linear peptide motifs containing a consensus that is present in many human proteins

31 October 2018

1 reference

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CrkI and CrkII function as key signaling integrators for migration and invasion of cancer cells.

31 October 2018

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Phosphorylation effects on cis/trans isomerization and the backbone conformation of serine-proline motifs: accelerated molecular dynamics analysis

31 October 2018

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Determination of the cis-trans isomerization barrier of enalaprilat by dynamic capillary electrophoresis and computer simulation

31 October 2018

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What is so special about Arg 55 in the catalysis of cyclophilin A? insights from hybrid QM/MM simulations

31 October 2018

1 reference

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Increased C-CRK proto-oncogene expression is associated with an aggressive phenotype in lung adenocarcinomas

31 October 2018

1 reference

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CrkI adapter protein modulates cell migration and invasion in glioblastoma

31 October 2018

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Proline cis-trans isomerization and protein folding

31 October 2018

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The mechanism of cis-trans isomerization of prolyl peptides by cyclophilin

31 October 2018

1 reference

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Local structural changes caused by peptidyl-prolyl cis/trans isomerization in the native state of proteins

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4007982

Determination of the cis-trans isomerization barrier of several L-peptidyl-L-proline dipeptides by dynamic capillary electrophoresis and computer simulation

31 October 2018

1 reference

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Non-proline cis peptide bonds in proteins.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4007982

Side-chain effects on peptidyl-prolyl cis/trans isomerisation.

31 October 2018

1 reference

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Conformational Studies of Polyprolines

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24702481

12 December 2020

inferred from PubMed ID database lookup

On the Cis to Trans Isomerization of Prolyl–Peptide Bonds under Tension

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24702481

12 December 2020

inferred from PubMed ID database lookup

A mechanism for rotamase catalysis by the FK506 binding protein (FKBP)

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24702481

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1021/JP5013297

1 reference

release_727cxuej45afzeans52tueh27q

28 July 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/727cxuej45afzeans52tueh27q

24 November 2022

mapped directly with Wikidata item

PMC publication ID

4007982

1 reference

28 July 2017

1 reference