Genomic characterization of methanomicrobiales reveals three classes of methanogens (Q33460423)

27 July 2017

title

Genomic characterization of methanomicrobiales reveals three classes of methanogens (English)

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27 July 2017

methanomicrobiales

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14

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20

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11

Alla Lapidus

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Biswarup Mukhopadhyay

Biswarup Mukhopadhyay

16

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William B. Whitman

William B Whitman

17

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Iain J. Anderson

1

Iain Anderson

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27 July 2017

13

Cliff Han

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15

Susan Lucas

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18

Carl Woese

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7

Athanasios Lykidis

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10

Eugene Goltsman

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6

Sean D Hooper

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Magdalena Sieprawska-Lupa

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8

Magdalena Sieprawska-Lupa

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27 July 2017

4

Dwi Susanti

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5

Iris Porat

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9

Lakshmi Dharmarajan

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Luke E Ulrich

2

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Boguslaw Lupa

3

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Elizabeth Saunders

12

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James Bristow

19

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27 July 2017

language of work or name

English

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publication date

4 June 2009

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27 July 2017

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27 July 2017

volume

4

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issue

6

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27 July 2017

page(s)

e5797

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Creative Commons Attribution 4.0 International

27 July 2017

copyright license

start time

4 June 2009

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Formate-dependent H2 production by the mesophilic methanogen Methanococcus maripaludis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

Methanogenic archaea: ecologically relevant differences in energy conservation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

In silico identification of genes involved in selenium metabolism: evidence for a third selenium utilization trait

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

Development of a spectral clustering method for the analysis of molecular data sets

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

Thirty years of Escherichia coli DNA gyrase: from in vivo function to single-molecule mechanism.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

Biosynthesis of selenocysteine on its tRNA in eukaryotes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

RNA-dependent conversion of phosphoserine forms selenocysteine in eukaryotes and archaea

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

Energy-converting [NiFe] hydrogenases: more than just H2 activation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

Classification of methanogenic bacteria by 16S ribosomal RNA characterization

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

Spectral clustering of protein sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

Disruption of the operon encoding Ehb hydrogenase limits anabolic CO2 assimilation in the archaeon Methanococcus maripaludis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

Structural and functional investigation of a putative archaeal selenocysteine synthase

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

Genomic studies of uncultivated archaea

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

Higher-level classification of the Archaea: evolution of methanogenesis and methanogens

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

MrBayes 3: Bayesian phylogenetic inference under mixed models

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

Genetic analysis of the archaeon Methanosarcina barkeri Fusaro reveals a central role for Ech hydrogenase and ferredoxin in methanogenesis and carbon fixation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

ADP-dependent phosphofructokinases in mesophilic and thermophilic methanogenic archaea

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

Improved microbial gene identification with GLIMMER

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

CRITICA: coding region identification tool invoking comparative analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

Consed: A Graphical Tool for Sequence Finishing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

Base-Calling of Automated Sequencer Traces UsingPhred. I. Accuracy Assessment

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

TreeView: an application to display phylogenetic trees on personal computers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

Coumarin and quinolone action in archaebacteria: evidence for the presence of a DNA gyrase-like enzyme

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

Phylogenetic structure of the prokaryotic domain: The primary kingdoms

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686161

Isolation and Characterization of Methanocorpusculum labreanum sp. nov. from the LaBrea Tar Pits

28 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0005797

Methanospirillum, a New Genus of Methanogenic Bacteria, and Characterization of Methanospirillum hungatii sp.nov

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0005797

Coenzyme binding in F420-dependent secondary alcohol dehydrogenase, a member of the bacterial luciferase family

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0005797

Physiological role of the F420-non-reducing hydrogenase (Mvh) from Methanothermobacter marburgensis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0005797

A third type of hydrogenase catalyzing H2 activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0005797

Filling a gap in the central metabolism of archaea: prediction of a novel aconitase by comparative-genomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0005797

Three sites of contact between the Bacillus subtilis transcription factor sigmaF and its antisigma factor SpoIIAB.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0005797

Purification and properties of F420- and NADP(+)-dependent alcohol dehydrogenases of Methanogenium liminatans and Methanobacterium palustre, specific for secondary alcohols

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19495416

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Bacterial sigma 70 transcription factor DNA-binding domains in the archaeon Methanococcus jannaschii

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19495416

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Methane: small molecule, big impact

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19495416

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0005797

1 reference

27 July 2017

0 references

1 reference

27 July 2017

1 reference