A large new subset of TRIM genes highly diversified by duplication and positive selection in teleost fish (Q33406010)

26 July 2017

title

A large new subset of TRIM genes highly diversified by duplication and positive selection in teleost fish (English)

1 reference

26 July 2017

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8

Pierre Boudinot

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Jean-Pierre Levraud

2

object named as

Jean-Pierre Levraud

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author name string

Lieke M van der Aa

1

1 reference

26 July 2017

Malika Yahmi

3

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26 July 2017

Emilie Lauret

4

1 reference

26 July 2017

Valérie Briolat

5

1 reference

26 July 2017

Philippe Herbomel

6

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26 July 2017

Abdenour Benmansour

7

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26 July 2017

publication date

5 February 2009

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26 July 2017

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26 July 2017

volume

7

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26 July 2017

page(s)

7

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Genomic analysis of the TRIM family reveals two groups of genes with distinct evolutionary properties

26 July 2017

cites work

1 reference

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A genomic view of the NOD-like receptor family in teleost fish: identification of a novel NLR subfamily in zebrafish

21 June 2018

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TRIM E3 ligases interfere with early and late stages of the retroviral life cycle

21 June 2018

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Discordant evolution of the adjacent antiretroviral genes TRIM22 and TRIM5 in mammals

21 June 2018

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Conservation and divergence of gene families encoding components of innate immune response systems in zebrafish

21 June 2018

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TRIM28 mediates primer binding site-targeted silencing of murine leukemia virus in embryonic cells

21 June 2018

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Comparative requirements for the restriction of retrovirus infection by TRIM5alpha and TRIMCyp

21 June 2018

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Cutting edge: autoantigen Ro52 is an interferon inducible E3 ligase that ubiquitinates IRF-8 and enhances cytokine expression in macrophages

21 June 2018

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Rapid birth-death evolution specific to xenobiotic cytochrome P450 genes in vertebrates

21 June 2018

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Rhesus monkey TRIM5alpha restricts HIV-1 production through rapid degradation of viral Gag polyproteins

21 June 2018

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Structural basis for PRYSPRY-mediated tripartite motif (TRIM) protein function

21 June 2018

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TRIM25 RING-finger E3 ubiquitin ligase is essential for RIG-I-mediated antiviral activity

21 June 2018

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Identification of the zebrafish IFN receptor: implications for the origin of the vertebrate IFN system.

21 June 2018

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PML and PML nuclear bodies: implications in antiviral defence

21 June 2018

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The theory of APL revisited

21 June 2018

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Structural basis for protein recognition by B30.2/SPRY domains

21 June 2018

1 reference

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Balancing selection and the evolution of functional polymorphism in Old World monkey TRIM5alpha

21 June 2018

1 reference

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Genomic insights into the immune system of the sea urchin

21 June 2018

1 reference

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All three variable regions of the TRIM5alpha B30.2 domain can contribute to the specificity of retrovirus restriction

21 June 2018

1 reference

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Robust inference of positive selection from recombining coding sequences

21 June 2018

1 reference

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Effects of human TRIM5alpha polymorphisms on antiretroviral function and susceptibility to human immunodeficiency virus infection

21 June 2018

1 reference

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A novel family of diversified immunoregulatory receptors in teleosts is homologous to both mammalian Fc receptors and molecules encoded within the leukocyte receptor complex

21 June 2018

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Cyclophilin A: an auxiliary but not necessary cofactor for TRIM5alpha restriction of HIV-1.

21 June 2018

1 reference

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The estrogen-responsive B box protein: a novel enhancer of interleukin-1beta secretion

21 June 2018

1 reference

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Specific recognition and accelerated uncoating of retroviral capsids by the TRIM5alpha restriction factor

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

Structural and functional insights into the B30.2/SPRY domain.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

Subclassification of the RBCC/TRIM superfamily reveals a novel motif necessary for microtubule binding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

High-frequency persistence of an impaired allele of the retroviral defense gene TRIM5alpha in humans

21 June 2018

1 reference

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The interferon-inducible ubiquitin-protein isopeptide ligase (E3) EFP also functions as an ISG15 E3 ligase

21 June 2018

1 reference

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Relationship between SPRY and B30.2 protein domains. Evolution of a component of immune defence?

21 June 2018

1 reference

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A retrovirus restriction factor TRIM5alpha is transcriptionally regulated by interferons

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

TRIM/RBCC, a novel class of 'single protein RING finger' E3 ubiquitin ligases

21 June 2018

1 reference

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TRIM family proteins: retroviral restriction and antiviral defence

21 June 2018

1 reference

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Cryopyrin and pyrin activate caspase-1, but not NF-kappaB, via ASC oligomerization.

21 June 2018

1 reference

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The chicken leukocyte receptor complex: a highly diverse multigene family encoding at least six structurally distinct receptor types

21 June 2018

1 reference

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bloodthirsty, an RBCC/TRIM gene required for erythropoiesis in zebrafish

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

The B30.2(SPRY) domain of the retroviral restriction factor TRIM5alpha exhibits lineage-specific length and sequence variation in primates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

Species-specific variation in the B30.2(SPRY) domain of TRIM5alpha determines the potency of human immunodeficiency virus restriction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

Novel immunoglobulin-like transcripts in teleost fish encode polymorphic receptors with cytoplasmic ITAM or ITIM and a new structural Ig domain similar to the natural cytotoxicity receptor NKp44.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

TRIM5alpha mediates the postentry block to N-tropic murine leukemia viruses in human cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

The cytoplasmic body component TRIM5alpha restricts HIV-1 infection in Old World monkeys

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

Variation within the human killer cell immunoglobulin-like receptor (KIR) gene family.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

Survey of transcript expression in rainbow trout leukocytes reveals a major contribution of interferon-responsive genes in the early response to a rhabdovirus infection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

PML mediates the interferon-induced antiviral state against a complex retrovirus via its association with the viral transactivator

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

The tripartite motif family identifies cell compartments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

Paired Ig-like receptor homologs in birds and mammals share a common ancestor with mammalian Fc receptors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

Immune-type diversity in the absence of somatic rearrangement

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

Protein fold analysis of the B30.2-like domain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

Resistance to Virus Infection Conferred by the Interferon-Induced Promyelocytic Leukemia Protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

PAML: a program package for phylogenetic analysis by maximum likelihood

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

Opitz G/BBB syndrome, a defect of midline development, is due to mutations in a new RING finger gene on Xp22

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

Ly-49 multigene family expressed by IL-2-activated NK cells.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

A novel cysteine-rich sequence motif

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

A unique bipartite cysteine-histidine motif defines a subfamily of potential zinc-finger proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

Novel zinc finger gene implicated as myc collaborator by retrovirally accelerated lymphomagenesis in E mu-myc transgenic mice.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

A novel zinc finger coiled-coil domain in a family of nuclear proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

TRIM21 is a trimeric protein that binds IgG Fc via the B30.2 domain.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

Automated phylogenetic detection of recombination using a genetic algorithm

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

The contribution of RING and B-box 2 domains to retroviral restriction mediated by monkey TRIM5alpha

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

Nod2 mutation in Crohn's disease potentiates NF-kappaB activity and IL-1beta processing

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

B30.2-like domain proteins: update and new insights into a rapidly expanding family of proteins

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657112

Wide range of susceptibility to rhabdoviruses in homozygous clones of rainbow trout

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19196451

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

B30.2-like domain proteins: a growing family

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19196451

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1741-7007-7-7

1 reference

Dimensions Publication ID

26 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1741-7007-7-7

9 September 2019

1 reference

26 July 2017

1 reference