A simulated MS/MS library for spectrum-to-spectrum searching in large scale identification of proteins (Q33395570)

26 July 2017

title

A simulated MS/MS library for spectrum-to-spectrum searching in large scale identification of proteins (English)

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26 July 2017

9

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26 July 2017

William M Old

6

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Rob Knight

object named as

Rob Knight

7

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author name string

Chia-Yu Yen

1

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26 July 2017

Karen Meyer-Arendt

2

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26 July 2017

Brian Eichelberger

3

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26 July 2017

Shaojun Sun

4

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26 July 2017

Stephane Houel

5

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Natalie G Ahn

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Katheryn A Resing

10

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26 July 2017

publication date

22 December 2008

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Molecular & Cellular Proteomics

26 July 2017

published in

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26 July 2017

volume

8

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26 July 2017

issue

4

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26 July 2017

page(s)

857-869

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

26 July 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667364

Optimization and testing of mass spectral library search algorithms for compound identification

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667364

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667364

Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667364

Using annotated peptide mass spectrum libraries for protein identification

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667364

Improving sensitivity in shotgun proteomics using a peptide-centric database with reduced complexity: protease cleavage and SCX elution rules from data mining of MS/MS spectra

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667364

Large-scale database searching using tandem mass spectra: looking up the answer in the back of the book

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667364

Rapid identification of proteins by peptide-mass fingerprinting

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667364

MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667364

Improving reproducibility and sensitivity in identifying human proteins by shotgun proteomics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667364

The International Protein Index: an integrated database for proteomics experiments

14 July 2018

1 reference

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Mass spectrometry-based proteomics

14 July 2018

1 reference

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Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667364

Prediction of low-energy collision-induced dissociation spectra of peptides

14 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800384-MCP200

Prediction of low-energy collision-induced dissociation spectra of peptides with three or more charges

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800384-MCP200

Improved validation of peptide MS/MS assignments using spectral intensity prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800384-MCP200

Improving sensitivity by probabilistically combining results from multiple MS/MS search methodologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800384-MCP200

Analysis of the mouse liver proteome using advanced mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800384-MCP200

10.1074/MCP.M800384-MCP200

21 January 2018

Identifiers

DOI

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26 July 2017

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26 July 2017

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