Rare codons cluster (Q33377033)

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Language	Label	Description	Also known as
English	Rare codons cluster	scientific article

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

Rare codons cluster (English)

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

Patricia L. Clark

object named as

Patricia L Clark

2

0 references

author name string

Thomas F Clarke

1

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

language of work or name

0 references

publication date

15 October 2008

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

3

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

10

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

e3412

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

copyright license

Creative Commons Attribution 4.0 International

15 October 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Synonymous mutations and ribosome stalling can lead to altered folding pathways and distinct minima

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2565806

21 June 2018

Analysis of the distribution of functionally relevant rare codons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2565806

21 June 2018

Halting a cellular production line: responses to ribosomal pausing during translation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2565806

21 June 2018

hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2565806

21 June 2018

A "silent" polymorphism in the MDR1 gene changes substrate specificity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2565806

21 June 2018

Evolution of synonymous codon usage in metazoans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2565806

21 June 2018

Silent mutations affect in vivo protein folding in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2565806

21 June 2018

Gene expression and molecular evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2565806

21 June 2018

A newly synthesized, ribosome-bound polypeptide chain adopts conformations dissimilar from early in vitro refolding intermediates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2565806

21 June 2018

Codon usage tabulated from international DNA sequence databases: status for the year 2000

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2565806

21 June 2018

Protein secondary structural types are differentially coded on messenger RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2565806

21 June 2018

Ribosome-mediated translational pause and protein domain organization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2565806

21 June 2018

Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2565806

21 June 2018

Codon catalog usage and the genome hypothesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2565806

21 June 2018

Translation is a non-uniform process. Effect of tRNA availability on the rate of elongation of nascent polypeptide chains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2565806

21 June 2018

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2565806

21 June 2018

Effect of distribution of unfavourable codons on the maximum rate of gene expression by an heterologous organism.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2565806

21 June 2018

The maximum rate of gene expression is dependent on the downstream context of unfavourable codons.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2565806

21 June 2018

Absolute in vivo translation rates of individual codons in Escherichia coli. The two glutamic acid codons GAA and GAG are translated with a threefold difference in rate.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2565806

21 June 2018

Evidence for horizontal gene transfer in Escherichia coli speciation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2565806

21 June 2018

The Comprehensive Microbial Resource.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003412

21 January 2018

Human catechol-O-methyltransferase haplotypes modulate protein expression by altering mRNA secondary structure.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003412

21 January 2018

Large-scale search for genes on which positive selection may operate

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003412

21 January 2018

Why Are Translationally Sub-Optimal Synonymous Codons Used in Escherichia coli?

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003412

21 January 2018

Distribution of rare triplets along mRNA and their relation to protein folding

1 reference

https://pubmed.ncbi.nlm.nih.gov/18923675

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Folding type specific secondary structure propensities of synonymous codons

1 reference

https://pubmed.ncbi.nlm.nih.gov/18923675

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synonymous codon substitutions affect ribosome traffic and protein folding during in vitro translation

1 reference

https://pubmed.ncbi.nlm.nih.gov/18923675

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0003412

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

2008PLoSO...3.3412C

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

ResearchGate publication ID

0 references

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