Biased exonization of transposed elements in duplicated genes: A lesson from the TIF-IA gene (Q33307791)

25 July 2017

title

Biased exonization of transposed elements in duplicated genes: A lesson from the TIF-IA gene (English)

1 reference

25 July 2017

1 reference

Noa Sela

2

0 references

Noam Shomron

6

object named as

Noam Shomron

1 reference

25 July 2017

Maayan Amit

1

1 reference

25 July 2017

Hadas Keren

3

1 reference

25 July 2017

Ze'ev Melamed

4

1 reference

25 July 2017

Inna Muler

5

1 reference

25 July 2017

Shai Izraeli

7

1 reference

25 July 2017

Gil Ast

8

1 reference

25 July 2017

publication date

29 November 2007

1 reference

25 July 2017

published in

BMC Molecular Biology

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25 July 2017

volume

8

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25 July 2017

page(s)

109

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Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome.

25 July 2017

cites work

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21 June 2018

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The gene encoding the splicing factor SF2/ASF is a proto-oncogene

21 June 2018

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21 June 2018

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Different levels of alternative splicing among eukaryotes

21 June 2018

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21 June 2018

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Emergence of primate genes by retrotransposon-mediated sequence transduction

21 June 2018

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Origins and impact of constraints in evolution of gene families

21 June 2018

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Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons

21 June 2018

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Comparative analysis identifies exonic splicing regulatory sequences--The complex definition of enhancers and silencers

21 June 2018

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Mapping genes and pathways in autoimmune disease

21 June 2018

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An anthropoid-specific segmental duplication on human chromosome 1q22.

21 June 2018

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The importance of being divisible by three in alternative splicing

21 June 2018

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Expression divergence between duplicate genes

21 June 2018

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21 June 2018

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From the margins of the genome: mobile elements shape primate evolution

21 June 2018

1 reference

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Genetic inactivation of the transcription factor TIF-IA leads to nucleolar disruption, cell cycle arrest, and p53-mediated apoptosis

21 June 2018

1 reference

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Alu-SINE exonization: en route to protein-coding function

21 June 2018

1 reference

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How did alternative splicing evolve?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

The altered evolutionary trajectories of gene duplicates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

Minimal conditions for exonization of intronic sequences: 5' splice site formation in alu exons

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

YY1AP, a novel co-activator of YY1.

21 June 2018

1 reference

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Mobile elements and mammalian genome evolution.

21 June 2018

1 reference

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Asymmetric sequence divergence of duplicate genes

21 June 2018

1 reference

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Intronic sequences flanking alternatively spliced exons are conserved between human and mouse

21 June 2018

1 reference

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Gene duplication and other evolutionary strategies: from the RNA world to the future

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

Evolution of the protein repertoire

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

The birth of an alternatively spliced exon: 3' splice-site selection in Alu exons

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

Mechanisms of alternative pre-messenger RNA splicing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

Initial sequencing and comparative analysis of the mouse genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

Splitting pairs: the diverging fates of duplicated genes

21 June 2018

1 reference

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Comprehensive proteomic analysis of the human spliceosome

21 June 2018

1 reference

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Selection in the evolution of gene duplications

21 June 2018

1 reference

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A genomic view of alternative splicing

21 June 2018

1 reference

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Initial sequencing and analysis of the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

Alternative splicing: increasing diversity in the proteomic world

21 June 2018

1 reference

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Mutational analysis of patients with p47-phox-deficient chronic granulomatous disease: The significance of recombination events between the p47-phox gene (NCF1) and its highly homologous pseudogenes

21 June 2018

1 reference

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Alu elements and the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

Frequent alternative splicing of human genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

Preservation of duplicate genes by complementary, degenerative mutations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

Alu: structure, origin, evolution, significance and function of one-tenth of human DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

Enzyme evolution. I. The importance of untranslatable intermediates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

Growth-dependent regulation of rRNA synthesis is mediated by a transcription initiation factor (TIF-IA).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

A growth-dependent transcription initiation factor (TIF-IA) interacting with RNA polymerase I regulates mouse ribosomal RNA synthesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

On "genomenclature": a comprehensive (and respectful) taxonomy for pseudogenes and other "junk DNA"

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

7SL RNA, but not the 54-kd signal recognition particle protein, is an abundant component of both infectious HIV-1 and minimal virus-like particles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

Evolution of alternative splicing after gene duplication

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

Alu repeat analysis in the complete human genome: trends and variations with respect to genomic composition

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

Nonrandom distribution of alu elements in genes of various functional categories: insight from analysis of human chromosomes 21 and 22.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231382

Alternative splicing and gene duplication are inversely correlated evolutionary mechanisms

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18047649

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Duplication, degeneration and subfunctionalization of the nested synapsin–Timp genes in Fugu

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18047649

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2199-8-109

1 reference

Dimensions Publication ID

25 July 2017

1 reference

0 references

1 reference

25 July 2017

1 reference