Sequence features responsible for intron retention in human (Q33275628)

25 July 2017

title

Sequence features responsible for intron retention in human (English)

1 reference

25 July 2017

2

Sandro José de Souza

1 reference

25 July 2017

Noboru Jo Sakabe

1

1 reference

25 July 2017

language of work or name

English

0 references

publication date

26 February 2007

1 reference

25 July 2017

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25 July 2017

volume

8

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25 July 2017

page(s)

59

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Intron size, abundance, and distribution within untranslated regions of genes

25 July 2017

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General and specific functions of exonic splicing silencers in splicing control

21 June 2018

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The Tgif2 gene contains a retained intron within the coding sequence

21 June 2018

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Characteristics and regulatory elements defining constitutive splicing and different modes of alternative splicing in human and mouse

21 June 2018

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Recognition of unknown conserved alternatively spliced exons

21 June 2018

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Understanding alternative splicing: towards a cellular code

21 June 2018

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Serine/arginine-rich protein-dependent suppression of exon skipping by exonic splicing enhancers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831480

Multiple links between transcription and splicing

21 June 2018

1 reference

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The evolving roles of alternative splicing

21 June 2018

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21 June 2018

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Transcriptome and genome conservation of alternative splicing events in humans and mice.

21 June 2018

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Nucleotide Frequency Variation Across Human Genes

21 June 2018

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Human housekeeping genes are compact

21 June 2018

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ESEfinder: A web resource to identify exonic splicing enhancers

21 June 2018

1 reference

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A quantitative analysis of intron effects on mammalian gene expression

21 June 2018

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21 June 2018

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Order of intron removal influences multiple splice outcomes, including a two-exon skip, in a COL5A1 acceptor-site mutation that results in abnormal pro-alpha1(V) N-propeptides and Ehlers-Danlos syndrome type I

21 June 2018

1 reference

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An anatomy of normal and malignant gene expression

21 June 2018

1 reference

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Predictive identification of exonic splicing enhancers in human genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831480

Splicing of constitutive upstream introns is essential for the recognition of intra-exonic suboptimal splice sites in the thrombopoietin gene

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831480

Alternative splicing of intron 3 of the serine/arginine-rich protein 9G8 gene. Identification of flanking exonic splicing enhancers and involvement of 9G8 as a trans-acting factor

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831480

Evidence for splice site pairing via intron definition in Schizosaccharomyces pombe

21 June 2018

1 reference

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EMBOSS: the European Molecular Biology Open Software Suite

21 June 2018

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A computer program for aligning a cDNA sequence with a genomic DNA sequence

21 June 2018

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

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G Triplets Located throughout a Class of Small Vertebrate Introns Enforce Intron Borders and Regulate Splice Site Selection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831480

Architectural limits on split genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831480

Intron definition in splicing of small Drosophila introns

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831480

Exon recognition in vertebrate splicing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831480

In Vivo Recognition of a Vertebrate Mini-Exon as an Exon-Intron-Exon Unit

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831480

The gene encoding human splicing factor 9G8. Structure, chromosomal localization, and expression of alternatively processed transcripts

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831480

Serial analysis of gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831480

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831480

RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831480

Splicing signals in Drosophila: intron size, information content, and consensus sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831480

Differential expression of splice variants of chemokine CCL27 mRNA in lens, cornea, and retina of the normal mouse eye.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831480

Detection and evaluation of intron retention events in the human transcriptome.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831480

An alternative-exon database and its statistical analysis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831480

Multiple splicing signals control alternative intron retention of bovine growth hormone pre-mRNA

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17324281

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Distribution of exonic splicing enhancer elements in human genes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17324281

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-8-59

1 reference

Dimensions Publication ID

25 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-8-59

9 September 2019

1 reference

25 July 2017

1 reference