Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models. (Q33236758)

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18 January 2020

review article

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title

Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models (English)

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18 January 2020

5

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18 January 2020

Wolfgang Florian Fricke

6

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18 January 2020

Rainer Merkl

9

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18 January 2020

author name string

Stephan Waack

1

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18 January 2020

Oliver Keller

2

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18 January 2020

Roman Asper

3

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18 January 2020

Thomas Brodag

4

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18 January 2020

Katharina Surovcik

7

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18 January 2020

Peter Meinicke

8

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18 January 2020

publication date

16 March 2006

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18 January 2020

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18 January 2020

volume

7

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18 January 2020

page(s)

142

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Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources

18 January 2020

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21 June 2018

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SIGI: score-based identification of genomic islands

21 June 2018

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Gene prediction with a hidden Markov model and a new intron submodel

21 June 2018

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21 June 2018

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21 June 2018

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The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea

21 June 2018

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Mining Bacillus subtilis chromosome heterogeneities using hidden Markov models

21 June 2018

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Detection of genes with atypical nucleotide sequence in microbial genomes

21 June 2018

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Detection of lateral gene transfer among microbial genomes.

21 June 2018

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Capturing whole-genome characteristics in short sequences using a naïve Bayesian classifier

21 June 2018

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On surrogate methods for detecting lateral gene transfer

21 June 2018

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Detecting anomalous gene clusters and pathogenicity islands in diverse bacterial genomes

21 June 2018

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21 June 2018

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Phylogenetic analyses of two "archaeal" genes in thermotoga maritima reveal multiple transfers between archaea and bacteria

21 June 2018

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21 June 2018

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Horizontal gene transfer in bacterial and archaeal complete genomes

21 June 2018

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Pathogenicity islands and the evolution of microbes

21 June 2018

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DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae

21 June 2018

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Lateral gene transfer and the nature of bacterial innovation

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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The complete genome sequence of the gram-positive bacterium Bacillus subtilis

21 June 2018

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Prediction of complete gene structures in human genomic DNA

21 June 2018

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Amelioration of bacterial genomes: rates of change and exchange

21 June 2018

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Lysogenic conversion by a filamentous phage encoding cholera toxin

21 June 2018

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Complete nucleotide sequence of a skin element excised by DNA rearrangement during sporulation in Bacillus subtilis

21 June 2018

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Codon catalog usage and the genome hypothesis

21 June 2018

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Characterization of PBSX, a defective prophage of Bacillus subtilis

21 June 2018

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A comparative categorization of gene flux in diverse microbial species

21 June 2018

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A survey of codon and amino acid frequency bias in microbial genomes focusing on translational efficiency.

31 October 2018

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Limitations of compositional approach to identifying horizontally transferred genes

31 October 2018

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Two methods for improving performance of an HMM and their application for gene finding

31 October 2018

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31 October 2018

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12 December 2020

A comparative categorization of protein function encoded in bacterial or archeal genomic islands

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12 December 2020

Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti (supplement)

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12 December 2020

G+C3 Structuring Along the Genome: A Common Feature in Prokaryotes

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12 December 2020

Identifiers

DOI

10.1186/1471-2105-7-142

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16542435%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/WaackKABDFSMM06

18 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16542435%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

PubMed publication ID

16542435

1 reference