Finding biologically relevant protein domain interactions: conserved binding mode analysis (Q33230549)

24 July 2017

title

Finding biologically relevant protein domain interactions: conserved binding mode analysis (English)

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24 July 2017

3

Stephen H Bryant

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24 July 2017

2

Anna R Panchenko

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24 July 2017

Benjamin A Shoemaker

1

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24 July 2017

publication date

29 December 2005

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24 July 2017

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24 July 2017

volume

15

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24 July 2017

issue

2

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24 July 2017

page(s)

352-361

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Histone structure and nucleosome stability

24 July 2017

cites work

1 reference

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CDD: a Conserved Domain Database for protein classification

21 June 2018

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CD-Search: protein domain annotations on the fly

21 June 2018

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A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications

21 June 2018

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Prediction of functional sites by analysis of sequence and structure conservation

21 June 2018

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CDART: protein homology by domain architecture

21 June 2018

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The geometry of domain combination in proteins

21 June 2018

1 reference

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CDD: a database of conserved domain alignments with links to domain three-dimensional structure

21 June 2018

1 reference

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21 June 2018

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Cooperative hemoglobins: conserved fold, diverse quaternary assemblies and allosteric mechanisms

21 June 2018

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Crystalline ligand transitions in lamprey hemoglobin. Structural evidence for the regulation of oxygen affinity

21 June 2018

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Networking proteins in yeast

21 June 2018

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A comprehensive two-hybrid analysis to explore the yeast protein interactome

21 June 2018

1 reference

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Conformational change of elongation factor Tu (EF-Tu) induced by antibiotic binding. Crystal structure of the complex between EF-Tu.GDP and aurodox

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855242

Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855242

Identification of protein oligomerization states by analysis of interface conservation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855242

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855242

Detecting protein function and protein-protein interactions from genome sequences

21 June 2018

1 reference

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Protein—protein crystal‐packing contacts

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855242

21 June 2018

1 reference

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The neighbor-joining method: a new method for reconstructing phylogenetic trees

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855242

The rapid generation of mutation data matrices from protein sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855242

21 June 2018

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PIBASE: a comprehensive database of structurally defined protein interfaces

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855242

A dissection of specific and non-specific protein-protein interfaces

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855242

Structural characterisation and functional significance of transient protein-protein interactions

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855242

Discriminating between homodimeric and monomeric proteins in the crystalline state

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855242

Ten thousand interactions for the molecular biologist

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855242

A soft, mean-field potential derived from crystal contacts for predicting protein-protein interactions

31 October 2018

1 reference

12 December 2020

Conservation of Orientation and Sequence in Protein Domain–Domain Interactions

1 reference

12 December 2020

Protein-protein interaction at crystal contacts

1 reference

12 December 2020

The Relationship Between Sequence and Interaction Divergence in Proteins

1 reference

12 December 2020

Specific versus non-specific contacts in protein crystals

1 reference

12 December 2020

Extent and nature of contacts between protein molecules in crystal lattices and between subunits of protein oligomers

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12 December 2020

Identifiers

DOI

10.1110/PS.051760806

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24 July 2017

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24 July 2017

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