The metagenomics of soil (Q33216317)

24 July 2017

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title

The metagenomics of soil (English)

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24 July 2017

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Rolf Daniel

1

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language of work or name

English

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publication date

1 June 2005

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Nature Reviews Microbiology

24 July 2017

published in

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24 July 2017

volume

3

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24 July 2017

issue

6

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24 July 2017

page(s)

470-478

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Microbial diversity and function in soil: from genes to ecosystems

24 July 2017

cites work

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Prokaryotes: the unseen majority

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Laboratory cultivation of widespread and previously uncultured soil bacteria

21 January 2018

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Isolating "uncultivable" microorganisms in pure culture in a simulated natural environment

21 January 2018

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Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products

21 January 2018

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The Earth's bounty: assessing and accessing soil microbial diversity

21 January 2018

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Simultaneous recovery of RNA and DNA from soils and sediments

21 January 2018

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Empirical and theoretical bacterial diversity in four Arizona soils

21 January 2018

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Spatial and resource factors influencing high microbial diversity in soil

21 January 2018

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Diazotrophic community structure and function in two successional stages of biological soil crusts from the Colorado Plateau and Chihuahuan Desert

21 January 2018

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Grassland management regimens reduce small-scale heterogeneity and species diversity of beta-proteobacterial ammonia pxidizer populations.

21 January 2018

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Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms

21 January 2018

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Screening of environmental DNA libraries for the presence of genes conferring lipolytic activity on Escherichia coli

21 January 2018

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Screening for novel lipolytic enzymes from uncultured soil microorganisms

21 January 2018

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Bacterial alkaline proteases: molecular approaches and industrial applications.

21 January 2018

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Rapid extraction and purification of environmental DNA for molecular cloning applications and molecular diversity studies

21 January 2018

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Metagenomes of complex microbial consortia derived from different soils as sources for novel genes conferring formation of carbonyls from short-chain polyols on Escherichia coli

21 January 2018

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A novel, high performance enzyme for starch liquefaction. Discovery and optimization of a low pH, thermostable alpha-amylase

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1160

Characterization of a novel amylolytic enzyme encoded by a gene from a soil-derived metagenomic library

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1160

Novel natural products from soil DNA libraries in a streptomycete host

21 January 2018

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Recombinant environmental libraries provide access to microbial diversity for drug discovery from natural products

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1160

Uncultured soil bacteria are a reservoir of new antibiotic resistance genes

21 January 2018

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Screening of environmental DNA libraries for the presence of genes conferring Na(+)(Li(+))/H(+) antiporter activity on Escherichia coli: characterization of the recovered genes and the corresponding gene products

21 January 2018

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DNA extraction from soils: old bias for new microbial diversity analysis methods

21 January 2018

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Quantification of bacterial subgroups in soil: comparison of DNA extracted directly from soil or from cells previously released by density gradient centrifugation

21 January 2018

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Characterization of large-insert DNA libraries from soil for environmental genomic studies of Archaea.

21 January 2018

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Genetically modified bacterial strains and novel bacterial artificial chromosome shuttle vectors for constructing environmental libraries and detecting heterologous natural products in multiple expression hosts

21 January 2018

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Construction, characterization, and use of small-insert gene banks of DNA isolated from soil and enrichment cultures for the recovery of novel amidases

21 January 2018

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Cloning and heterologous expression of a natural product biosynthetic gene cluster from eDNA.

21 January 2018

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First insight into the genome of an uncultivated crenarchaeote from soil

21 January 2018

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Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics.

21 January 2018

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Phylogenetic analysis of polyketide synthase I domains from soil metagenomic libraries allows selection of promising clones

21 January 2018

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Metagenomics: genomic analysis of microbial communities

21 January 2018

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A Census of rRNA Genes and Linked Genomic Sequences within a Soil Metagenomic Library

21 January 2018

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Exploring nitrilase sequence space for enantioselective catalysis

21 January 2018

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Synthesis of long-chain fatty acid enol esters isolated from an environmental DNA clone

21 January 2018

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New natural product families from an environmental DNA (eDNA) gene cluster

21 January 2018

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DNA from uncultured organisms as a source of 2,5-diketo-D-gluconic acid reductases

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

Identification and characterization of coenzyme B12-dependent glycerol dehydratase- and diol dehydratase-encoding genes from metagenomic DNA libraries derived from enrichment cultures

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1160

Gene cassette PCR: sequence-independent recovery of entire genes from environmental DNA.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1160

Development and evaluation of functional gene arrays for detection of selected genes in the environment

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1160

Quantitative detection of microbial genes by using DNA microarrays

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1160

Validation of a more sensitive method for using spotted oligonucleotide DNA microarrays for functional genomics studies on bacterial communities

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1160

Metagenomic profiling: microarray analysis of an environmental genomic library

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1160

Construction and screening of metagenomic libraries derived from enrichment cultures: generation of a gene bank for genes conferring alcohol oxidoreductase activity on Escherichia coli

21 January 2018

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Direct cloning from enrichment cultures, a reliable strategy for isolation of complete operons and genes from microbial consortia

21 January 2018

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Prospecting for novel biocatalysts in a soil metagenome

21 January 2018

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Stable-isotope probing of nucleic acids: a window to the function of uncultured microorganisms

21 January 2018

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Resolving functional diversity in relation to microbial community structure in soil: exploiting genomics and stable isotope probing

21 January 2018

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Bacterial functional redundancy along a soil reclamation gradient

21 January 2018

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Integration of microbial ecology and statistics: a test to compare gene libraries

21 January 2018

1 reference

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Substrate-induced gene-expression screening of environmental metagenome libraries for isolation of catabolic genes

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1160

Environmental genome shotgun sequencing of the Sargasso Sea

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

Rapid and specific identification of nitrile hydratase (NHase)-encoding genes in soil samples by polymerase chain reaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

Novel techniques for analysing microbial diversity in natural and perturbed environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

Relationships between habitable pore space, soil biota and mineralization rates in grassland soils

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

Cultivating the uncultured

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

Comparison of rapid DNA extraction methods applied to contrasting New Zealand soils

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

Isolation of antibiotics turbomycin a and B from a metagenomic library of soil microbial DNA

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

Efficient recovery of environmental DNA for expression cloning by indirect extraction methods

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

PCR-SSCP comparison of 16S rDNA sequence diversity in soil DNA obtained using different isolation and purification methods

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

Long-chain N-acyltyrosine synthases from environmental DNA

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

A study of iterative type II polyketide synthases, using bacterial genes cloned from soil DNA: a means to access and use genes from uncultured microorganisms

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

Rapid and specific identification of nitrile hydratase (NHase)-encoding genes in soil samples by polymerase chain reaction

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

Challenges in applying microarrays to environmental studies

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

Recovery of DNA from soils and sediments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

7 January 2021

Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

7 January 2021

Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

7 January 2021

Construction of environmental DNA libraries in Escherichia coli and screening for the presence of genes conferring utilization of 4-hydroxybutyrate

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

7 January 2021

Metagenome—a challenging source of enzyme discovery

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https://api.crossref.org/works/10.1038%2FNRMICRO1160

7 January 2021

Detection of low numbers of bacterial cells in soils and sediments by polymerase chain reaction

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

7 January 2021

Soil-based gene discovery: a new technology to accelerate and broaden biocatalytic applications

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

7 January 2021

Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1160

7 January 2021

Identifiers

DOI

10.1038/NRMICRO1160

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Dimensions Publication ID

24 July 2017

1031640134

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