DNA structure and aspartate 276 influence nucleotide binding to human DNA polymerase beta. Implication for the identity of the rate-limiting conformational change (Q31452230)

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English	DNA structure and aspartate 276 influence nucleotide binding to human DNA polymerase beta. Implication for the identity of the rate-limiting conformational change	scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

2 July 2017

DNA structure and aspartate 276 influence nucleotide binding to human DNA polymerase beta. Implication for the identity of the rate-limiting conformational change (English)

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Europe PubMed Central

PubMed publication ID

2 July 2017

author name string

Vande Berg BJ

1

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Europe PubMed Central

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2 July 2017

Beard WA

2

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Europe PubMed Central

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2 July 2017

Wilson SH

3

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Europe PubMed Central

PubMed publication ID

2 July 2017

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publication date

9 October 2000

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2 July 2017

number of pages

9

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Journal of Biological Chemistry

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2 July 2017

276

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PubMed publication ID

2 July 2017

5

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Europe PubMed Central

PubMed publication ID

2 July 2017

3408-3416

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Europe PubMed Central

PubMed publication ID

2 July 2017

Requirement of mammalian DNA polymerase-beta in base-excision repair.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

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Role of DNA polymerase beta in the excision step of long patch mammalian base excision repair

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

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Impairment of proliferating cell nuclear antigen-dependent apurinic/apyrimidinic site repair on linear DNA.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

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DNA polymerase beta belongs to an ancient nucleotidyltransferase superfamily

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

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Crystal structure at 3.5 A resolution of HIV-1 reverse transcriptase complexed with an inhibitor

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https://api.crossref.org/works/10.1074%2FJBC.M002884200

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Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

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Crystal Structures of Human DNA Polymerase β Complexed with Gapped and Nicked DNA: Evidence for an Induced Fit Mechanism,

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

21 January 2018

Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 Å resolution

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

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Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

21 January 2018

Structure of a covalently trapped catalytic complex of HIV-1 reverse transcriptase: implications for drug resistance

1 reference

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Steady-state kinetics of mouse DNA polymerase beta

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

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Kinetic mechanism of DNA polymerase I (Klenow).

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

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The nucleotide analog 2-aminopurine as a spectroscopic probe of nucleotide incorporation by the Klenow fragment of Escherichia coli polymerase I and bacteriophage T4 DNA polymerase.

1 reference

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Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

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DNA polymerase beta: structure-fidelity relationship from Pre-steady-state kinetic analyses of all possible correct and incorrect base pairs for wild type and R283A mutant

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

21 January 2018

Excision of deoxyribose phosphate residues by DNA polymerase beta during DNA repair

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

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Enzyme-DNA interactions required for efficient nucleotide incorporation and discrimination in human DNA polymerase beta.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

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Analysis of numerical methods for computer simulation of kinetic processes: development of KINSIM--a flexible, portable system.

1 reference

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Analysis of progress curves by simulations generated by numerical integration

1 reference

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dNTP binding to HIV-1 reverse transcriptase and mammalian DNA polymerase beta as revealed by affinity labeling with a photoreactive dNTP analog.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

21 January 2018

Human immunodeficiency virus type 1 reverse transcriptase. 3'-Azidodeoxythymidine 5'-triphosphate inhibition indicates two-step binding for template-primer

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

21 January 2018

Mechanism of DNA replication fidelity for three mutants of DNA polymerase I: Klenow fragment KF(exo+), KF(polA5), and KF(exo-).

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

21 January 2018

Mechanistic studies examining the efficiency and fidelity of DNA synthesis by the 3TC-resistant mutant (184V) of HIV-1 reverse transcriptase

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

21 January 2018

Mutants affecting nucleotide recognition by T7 DNA polymerase.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

21 January 2018

Crystal structures of the Klenow fragment of DNA polymerase I complexed with deoxynucleoside triphosphate and pyrophosphate

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

21 January 2018

Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

21 January 2018

Crystal structures of the Klenow fragment of Thermus aquaticus DNA polymerase I complexed with deoxyribonucleoside triphosphates

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

21 January 2018

An open and closed case for all polymerases.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

21 January 2018

Structural design of a eukaryotic DNA repair polymerase: DNA polymerase beta.

1 reference

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21 January 2018

Increased Activity and Fidelity of DNA Polymerase β on Single-nucleotide Gapped DNA

1 reference

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21 January 2018

DNA polymerase beta: effects of gapped DNA substrates on dNTP specificity, fidelity, processivity and conformational changes

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21 January 2018

Crystal Structure of a pol α Family Replication DNA Polymerase from Bacteriophage RB69

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21 January 2018

Crystal structure of the RNA-dependent RNA polymerase of hepatitis C virus

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Crystal structure of a thermostable type B DNA polymerase from Thermococcus gorgonarius

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M002884200

21 January 2018

Crystal structure of the RNA-dependent RNA polymerase from hepatitis C virus reveals a fully encircled active site

1 reference

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Characterization of an African swine fever virus 20-kDa DNA polymerase involved in DNA repair

1 reference

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Uniquely altered DNA replication fidelity conferred by an amino acid change in the nucleotide binding pocket of human immunodeficiency virus type 1 reverse transcriptase

1 reference

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21 January 2018

Effect of RNA Secondary Structure on the Kinetics of DNA Synthesis Catalyzed by HIV-1 Reverse Transcriptase

1 reference

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DNA secondary structure effects on DNA synthesis catalyzed by HIV-1 reverse transcriptase

1 reference

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Electrostatic steering and ionic tethering in enzyme-ligand binding: insights from simulations

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Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

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MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

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Raster3D: photorealistic molecular graphics

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21 January 2018

Identifiers

10.1074/JBC.M002884200

1 reference

Europe PubMed Central

PubMed publication ID

2 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 July 2017

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