Proteomics and the analysis of proteomic data: an overview of current protein-profiling technologies (Q31153300)

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6 January 2020

review article

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title

Proteomics and the analysis of proteomic data: an overview of current protein-profiling technologies (English)

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6 January 2020

author

Christopher M Colangelo

2

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6 January 2020

author name string

Erol E Gulcicek

1

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6 January 2020

Walter McMurray

3

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6 January 2020

Kathryn Stone

4

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6 January 2020

Kenneth Williams

5

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6 January 2020

Terence Wu

6

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6 January 2020

Hongyu Zhao

7

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6 January 2020

Heidi Spratt

8

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6 January 2020

Alexander Kurosky

9

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6 January 2020

Baolin Wu

10

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publication date

1 July 2005

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Current Protocols in Bioinformatics

6 January 2020

published in

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6 January 2020

volume

Chapter 13

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6 January 2020

page(s)

Unit 13.1

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

6 January 2020

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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The SELDI-TOF MS approach to proteomics: protein profiling and biomarker identification

21 June 2018

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Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae

21 June 2018

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Use of proteomic patterns in serum to identify ovarian cancer

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Glycosylation analysis of gel-separated proteins

21 June 2018

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Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry

21 June 2018

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Global analysis of protein activities using proteome chips

21 June 2018

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Proteolytic 18O labeling for comparative proteomics: model studies with two serotypes of adenovirus

21 June 2018

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Glycosylation, immunity, and autoimmunity

21 June 2018

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Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome

21 June 2018

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Intracellular functions of N-linked glycans

21 June 2018

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Large-scale analysis of the yeast proteome by multidimensional protein identification technology

21 June 2018

1 reference

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Chromatofocusing nonporous reversed-phase high-performance liquid chromatography/electrospray ionization time-of-flight mass spectrometry of proteins from human breast cancer whole cell lysates: a novel two-dimensional liquid chromatography/mass spe

21 June 2018

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Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions

21 June 2018

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Printing proteins as microarrays for high-throughput function determination

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

Towards high performance two-dimensional gel electrophoresis using ultrazoom gels

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

A thousand points of light: the application of fluorescence detection technologies to two-dimensional gel electrophoresis and proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

Probability-based protein identification by searching sequence databases using mass spectrometry data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

De novo peptide sequencing via tandem mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

A sampling of the yeast proteome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

Immobilized gallium(III) affinity chromatography of phosphopeptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

Accurate quantitation of protein expression and site-specific phosphorylation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

Correlation between protein and mRNA abundance in yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

Fourier transform ion cyclotron resonance mass spectrometry: a primer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

Comprehensive two-dimensional high-performance liquid chromatography for the isolation of overexpressed proteins and proteome mapping

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

Difference gel electrophoresis. A single gel method for detecting changes in protein extracts

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

Signaling Through Scaffold, Anchoring, and Adaptor Proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

On target with a new mechanism for the regulation of protein phosphorylation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

Use of mass spectrometric molecular weight information to identify proteins in sequence databases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

Error-tolerant identification of peptides in sequence databases by peptide sequence tags

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

The role of protein phosphorylation in neural and hormonal control of cellular activity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

Signal integration at the level of protein kinases, protein phosphatases and their substrates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

Intensity-based protein identification by machine learning from a library of tandem mass spectra.

21 June 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

SILVER helps assign peptides to tandem mass spectra using intensity-based scoring.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

Phosphoprotein isotope-coded affinity tag approach for isolating and quantitating phosphopeptides in proteome-wide analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

A new strategy for identification of N-glycosylated proteins and unambiguous assignment of their glycosylation sites using HILIC enrichment and partial deglycosylation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

Matrix-assisted laser desorption/ionization time-of-flight mass analysis of peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

Phosphospecific proteolysis for mapping sites of protein phosphorylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

Improved beta-elimination-based affinity purification strategy for enrichment of phosphopeptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

A proteome strategy for fractionating proteins and peptides using continuous free-flow electrophoresis coupled off-line to reversed-phase high-performance liquid chromatography

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

Identification of novel and downregulated biomarkers for alcoholism by surface enhanced laser desorption/ionization-mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

Acid-labile isotope-coded extractants: a class of reagents for quantitative mass spectrometric analysis of complex protein mixtures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

Trends in microarray analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

GutenTag: high-throughput sequence tagging via an empirically derived fragmentation model

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

Implementation and uses of automated de novo peptide sequencing by tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

Web and database software for identification of intact proteins using "top down" mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

Impact of ion trap tandem mass spectra variability on the identification of peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

Protein microarrays using liquid phase fractionation of cell lysates

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

Partially supervised learning using an EM-boosting algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

A systematic approach to the analysis of protein phosphorylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

Quantitative proteome analysis by solid-phase isotope tagging and mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

Selective Isolation at the Femtomole Level of Phosphopeptides from Proteolytic Digests Using 2D-NanoLC-ESI-MS/MS and Titanium Oxide Precolumns

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

Phosphoprotein Isotope-Coded Affinity Tags: Application to the Enrichment and Identification of Low-Abundance Phosphoproteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

Gene expression profiling using advanced mass spectrometric approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

Assay of advanced glycation endproducts (AGEs): surveying AGEs by chromatographic assay with derivatization by 6-aminoquinolyl-N-hydroxysuccinimidyl-carbamate and application to Nepsilon-carboxymethyl-lysine- and Nepsilon-(1-carboxyethyl)lysine-modi

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863626

Constellations in a cellular universe

31 October 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI1301S10

Proteomic patterns in serum and identification of ovarian cancer

21 January 2018

1 reference

12 December 2020

Automated interpretation of low-energy collision-induced dissociation spectra by SeqMS, a software aid for de novo sequencing by tandem mass spectrometry

1 reference

12 December 2020

Two-dimensional SEC/RPLC coupled to mass spectrometry for the analysis of peptides

1 reference

12 December 2020

Rapid Peptide Mapping by Reversed-Phase Liquid Chromatography on Nonporous Silica with On-Line Electrospray Time-of-Flight Mass Spectrometry

1 reference

12 December 2020

Periodate oxidation of carbohydrates

1 reference

12 December 2020

Control of metastasis by Asn-linked, beta1-6 branched oligosaccharides in mouse mammary cancer cells

1 reference

12 December 2020

Automated instrumentation for comprehensive two-dimensional high-performance liquid chromatography of proteins

1 reference

12 December 2020

10.1002/0471250953.BI1301S10

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18428746%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18428746%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

PubMed publication ID

18428746

1 reference