Complete genome and transcriptomes of Streptococcus parasanguinis FW213: phylogenic relations and potential virulence mechanisms (Q31056771)

2 November 2017

Complete genome and transcriptomes of Streptococcus parasanguinis FW213: phylogenic relations and potential virulence mechanisms (English)

1 reference

Streptococcus parasanguinis

2 November 2017

0 references

object named as

Streptococcus parasanguinis

1 reference

based on heuristic

inferred from title

whole genome sequencing

1 reference

6

1 reference

PubMed publication ID

28 June 2017

Petrus Tang

3

0 references

author name string

Jianing Geng

1

1 reference

2 November 2017

Cheng-Hsun Chiu

2

1 reference

2 November 2017

Yaping Chen

4

1 reference

2 November 2017

Hui-Ru Shieh

5

1 reference

2 November 2017

Yi-Ywan M Chen

7

1 reference

2 November 2017

language of work or name

English

0 references

publication date

18 April 2012

1 reference

2 November 2017

1 reference

2 November 2017

7

1 reference

2 November 2017

4

1 reference

2 November 2017

e34769

1 reference

Creative Commons Attribution 4.0 International

2 November 2017

start time

18 April 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

MUMmer

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing

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A systematic survey of mini-proteins in bacteria and archaea

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A model of efficiency: stress tolerance by Streptococcus mutans

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Multiple sequence alignment using ClustalW and ClustalX

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Complete genome of Phenylobacterium zucineum--a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562.

21 June 2018

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Environmental and growth phase regulation of the Streptococcus gordonii arginine deiminase genes

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Streptococcal antagonism in oral biofilms: Streptococcus sanguinis and Streptococcus gordonii interference with Streptococcus mutans

21 June 2018

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Ori-Finder: a web-based system for finding oriCs in unannotated bacterial genomes

21 June 2018

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cadDX operon of Streptococcus salivarius 57.I.

21 June 2018

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Genome-wide transcriptional changes in Streptococcus gordonii in response to competence signaling peptide

21 June 2018

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Characterization of IsaA and SceD, two putative lytic transglycosylases of Staphylococcus aureus

21 June 2018

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Global transcriptional analysis of Streptococcus mutans sugar transporters using microarrays

21 June 2018

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The glycan moieties and the N-terminal polypeptide backbone of a fimbria-associated adhesin, Fap1, play distinct roles in the biofilm development of Streptococcus parasanguinis

21 June 2018

1 reference

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Genome of the opportunistic pathogen Streptococcus sanguinis

21 June 2018

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Two gene determinants are differentially involved in the biogenesis of Fap1 precursors in Streptococcus parasanguis

21 June 2018

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The atlA operon of Streptococcus mutans: role in autolysin maturation and cell surface biogenesis

21 June 2018

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Functional analysis of glucan binding protein B from Streptococcus mutans

21 June 2018

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From genomics to chemical genomics: new developments in KEGG

21 June 2018

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sRNAPredict: an integrative computational approach to identify sRNAs in bacterial genomes

21 June 2018

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21 June 2018

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21 June 2018

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Responses of cariogenic streptococci to environmental stresses.

21 June 2018

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Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus

21 June 2018

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21 June 2018

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A role for mechanosensitive channels in survival of stationary phase: regulation of channel expression by RpoS

21 June 2018

1 reference

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Spx-dependent global transcriptional control is induced by thiol-specific oxidative stress in Bacillus subtilis

21 June 2018

1 reference

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Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolution

21 June 2018

1 reference

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Involvement of the adc operon and manganese homeostasis in Streptococcus gordonii biofilm formation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

The InterPro database, 2003 brings increased coverage and new features

21 June 2018

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Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen

21 June 2018

1 reference

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The divergently transcribed Streptococcus parasanguis virulence-associated fimA operon encoding an Mn(2+)-responsive metal transporter and pepO encoding a zinc metallopeptidase are not coordinately regulated

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

A complete sequence of the T. tengcongensis genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Streptococcus parasanguis fimbria-associated adhesin fap1 is required for biofilm formation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

RNA expression analysis using a 30 base pair resolution Escherichia coli genome array

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Alkali production by oral bacteria and protection against dental caries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Oral microbial communities: biofilms, interactions, and genetic systems

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

A shift from oral to blood pH is a stimulus for adaptive gene expression of Streptococcus gordonii CH1 and induces protection against oxidative stress and enhanced bacterial growth by expression of msrA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Identification of dipeptide repeats and a cell wall sorting signal in the fimbriae-associated adhesin, Fap1, of Streptococcus parasanguis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

The COG database: a tool for genome-scale analysis of protein functions and evolution

21 June 2018

1 reference

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Improved microbial gene identification with GLIMMER

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Cloning and assembly strategies in microbial genome projects.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Transcriptional regulation of the Streptococcus salivarius 57.I urease operon.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Isolation and characterization of Fap1, a fimbriae-associated adhesin of Streptococcus parasanguis FW213.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Postcardiac surgery infections

21 June 2018

1 reference

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Evidence for autolysin‐mediated primary attachment of Staphylococcus epidermidis to a polystyrene surface

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Characterization of the locus encoding the Streptococcus pneumoniae type 19F capsular polysaccharide biosynthetic pathway

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Immunization with FimA protects against Streptococcus parasanguis endocarditis in rats

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

21 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

21 June 2018

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034769

The biochemistry and genetics of capsular polysaccharide production in bacteria

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Streptococcus salivarius urease: genetic and biochemical characterization and expression in a dental plaque streptococcus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Autoregulation of Nisin Biosynthesis in Lactococcus lactis by Signal Transduction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

FimA, a major virulence factor associated with Streptococcus parasanguis endocarditis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Determination of 16S rRNA sequences of Streptococcus mitis and Streptococcus gordonii and phylogenetic relationships among members of the genus Streptococcus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Exopolysaccharide production by viridans streptococci in experimental endocarditis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Effects of molecular weight of dextran on the adherence of Streptococcus sanguis to damaged heart valves

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Biochemical and genetic characterization of osmoregulatory trehalose synthesis in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Antibodies that bind to fimbriae block adhesion of Streptococcus sanguis to saliva-coated hydroxyapatite

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Surface properties of Streptococcus sanguis FW213 mutants nonadherent to saliva-coated hydroxyapatite

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Role of the arginine deiminase system in protecting oral bacteria and an enzymatic basis for acid tolerance.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Tn5253, the pneumococcal omega (cat tet) BM6001 element, is a composite structure of two conjugative transposons, Tn5251 and Tn5252.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Distribution, antibiotic susceptibility and tolerance of bacterial isolates in culture-positive cases of endocarditis in The Netherlands

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Bacterial adherence in oral microbial ecology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Adherence of glucan-positive and glucan-negative streptococcal strains to normal and damaged heart valves

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

ThefimAlocus ofStreptococcus parasanguisencodes an ATP‐binding membrane transport system

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034769

Evidence that ORF3 at the Streptococcus parasanguis fimA locus encodes a thiol-specific antioxidant

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034769

Salivaricin A2 and the novel lantibiotic salivaricin B are encoded at adjacent loci on a 190-kilobase transmissible megaplasmid in the oral probiotic strain Streptococcus salivarius K12.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034769

Synthesis of lactococcin 972, a bacteriocin produced by Lactococcus lactis IPLA 972, depends on the expression of a plasmid-encoded bicistronic operon

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034769

Predicted functions and linkage specificities of the products of the Streptococcus pneumoniae capsular biosynthetic loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034769

Absence of pneumococcal PcsB is associated with overexpression of LysM domain-containing proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034769

Positive role of peptidoglycan breaks in lactococcal biofilm formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034769

Subcellular location of the soluble lytic transglycosylase homologue in Staphylococcus aureus

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034769

Acetaldehyde production from ethanol by oral streptococci.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034769

Optimized multiplex PCR: efficiently closing a whole-genome shotgun sequencing project

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034769

A probabilistic method for identifying start codons in bacterial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034769

Automatic clustering of orthologs and inparalogs shared by multiple proteomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034769

IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034769

Transcriptome Complexity in a Genome-Reduced Bacterium

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034769

The InterPro database and tools for protein domain analysis

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3329508

Combined transcriptome and proteome analysis ofEscherichia coli during high cell density culture

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22529932

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Attributes of potential utility in differentiating among "group H" streptococci or Streptococcus sanguis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22529932

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0034769

1 reference

2 November 2017

0 references

1 reference

2 November 2017

PubMed publication ID

22529932

1 reference