Genome-wide analysis of plant nat-siRNAs reveals insights into their distribution, biogenesis and function. (Q30524875)

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26 January 2020

title

Genome-wide analysis of plant nat-siRNAs reveals insights into their distribution, biogenesis and function (English)

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26 January 2020

17

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26 January 2020

author name string

Xiaoming Zhang

1

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26 January 2020

Jing Xia

2

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26 January 2020

Yifan E Lii

3

1 reference

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26 January 2020

Blanca E Barrera-Figueroa

4

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26 January 2020

Xuefeng Zhou

5

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26 January 2020

Shang Gao

6

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26 January 2020

Lu Lu

7

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26 January 2020

Dongdong Niu

8

1 reference

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26 January 2020

Zheng Chen

9

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26 January 2020

Christy Leung

10

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26 January 2020

Timothy Wong

11

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26 January 2020

Huiming Zhang

12

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26 January 2020

Jianhua Guo

13

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26 January 2020

Yi Li

14

1 reference

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26 January 2020

Renyi Liu

15

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26 January 2020

Wanqi Liang

16

1 reference

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26 January 2020

Weixiong Zhang

18

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26 January 2020

Hailing Jin

19

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26 January 2020

publication date

1 January 2012

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26 January 2020

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26 January 2020

volume

13

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26 January 2020

issue

3

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26 January 2020

page(s)

R20

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Profiles of Small Non-Coding RNAs in Schistosoma japonicum during Development

26 January 2020

cites work

1 reference

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Misregulation of AUXIN RESPONSE FACTOR 8 underlies the developmental abnormalities caused by three distinct viral silencing suppressors in Arabidopsis

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ARGONAUTE2 mediates RNA-silencing antiviral defenses against Potato virus X in Arabidopsis.

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Arabidopsis Argonaute 2 Regulates Innate Immunity via miRNA393∗-Mediated Silencing of a Golgi-Localized SNARE Gene, MEMB12

14 July 2018

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Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions

14 July 2018

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An antiviral defense role of AGO2 in plants

14 July 2018

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Bacteria-responsive microRNAs regulate plant innate immunity by modulating plant hormone networks

14 July 2018

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Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome

14 July 2018

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Multiple distinct small RNAs originate from the same microRNA precursors

14 July 2018

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22-Nucleotide RNAs trigger secondary siRNA biogenesis in plants

14 July 2018

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siRNAs from miRNA sites mediate DNA methylation of target genes

14 July 2018

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Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis

14 July 2018

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Proper regulation of a sperm-specific cis-nat-siRNA is essential for double fertilization in Arabidopsis

14 July 2018

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An endogenous, systemic RNAi pathway in plants

14 July 2018

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Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip Mosaic Virus infection

14 July 2018

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14 July 2018

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RNA polymerase V transcription guides ARGONAUTE4 to chromatin

14 July 2018

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RNA-mediated chromatin-based silencing in plants

14 July 2018

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Strand selective generation of endo-siRNAs from the Na/phosphate transporter gene Slc34a1 in murine tissues

14 July 2018

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Discovery of plant microRNAs and short-interfering RNAs by deep parallel sequencing

14 July 2018

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The antisense transcriptomes of human cells

14 July 2018

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Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes

14 July 2018

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Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa

14 July 2018

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Endogenous small RNAs and antibacterial immunity in plants

14 July 2018

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Roles of RNA polymerase IV in gene silencing

14 July 2018

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14 July 2018

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Two distinct mechanisms generate endogenous siRNAs from bidirectional transcription in Drosophila melanogaster

14 July 2018

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An endogenous small interfering RNA pathway in Drosophila

14 July 2018

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Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes

14 July 2018

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Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes

14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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DICER-LIKE2 plays a primary role in transitive silencing of transgenes in Arabidopsis.

14 July 2018

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Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis.

14 July 2018

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A novel class of bacteria-induced small RNAs in Arabidopsis.

14 July 2018

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A natural antisense transcript of the Petunia hybrida Sho gene suggests a role for an antisense mechanism in cytokinin regulation

14 July 2018

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Specialization and evolution of endogenous small RNA pathways

14 July 2018

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Antiviral immunity directed by small RNAs

14 July 2018

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Suppression of antiviral silencing by cucumber mosaic virus 2b protein in Arabidopsis is associated with drastically reduced accumulation of three classes of viral small interfering RNAs

14 July 2018

1 reference

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Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing

14 July 2018

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Noncoding RNAs and gene silencing

14 July 2018

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Genome-wide profiling and analysis of Arabidopsis siRNAs

14 July 2018

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A pathogen-inducible endogenous siRNA in plant immunity

14 July 2018

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RNA interference-inducing hairpin RNAs in plants act through the viral defence pathway

14 July 2018

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Arabidopsis endogenous small RNAs: highways and byways

14 July 2018

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Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data.

14 July 2018

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An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs

14 July 2018

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MicroRNAS and their regulatory roles in plants

14 July 2018

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Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis

14 July 2018

1 reference

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Natural antisense transcripts: sound or silence?

14 July 2018

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Ribo-gnome: the big world of small RNAs

14 July 2018

1 reference

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Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana

14 July 2018

1 reference

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RNAi-mediated pathways in the nucleus

14 July 2018

1 reference

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14 July 2018

RNA silencing in plants

1 reference

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Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments

14 July 2018

1 reference

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Vienna RNA secondary structure server

14 July 2018

1 reference

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ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation

14 July 2018

1 reference

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Two classes of short interfering RNA in RNA silencing

14 July 2018

1 reference

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Endogenous and silencing-associated small RNAs in plants

14 July 2018

1 reference

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A species of small antisense RNA in posttranscriptional gene silencing in plants

14 July 2018

1 reference

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The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in Arabidopsis thaliana

14 July 2018

1 reference

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DNA methylation mediated by a microRNA pathway

26 November 2018

1 reference

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Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439971

Processing of naturally occurring sense/antisense transcripts of the vertebrate Slc34a gene into short RNAs

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439971

Discovery of pathogen-regulated small RNAs in plants

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439971

Distinct expression patterns of natural antisense transcripts in Arabidopsis

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439971

Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439971

AUXIN RESPONSE FACTOR8 is a negative regulator of fruit initiation in Arabidopsis

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439971

Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439971

Probing the microRNA and small interfering RNA pathways with virus-encoded suppressors of RNA silencing.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439971

DICER-LIKE 4 is required for RNA interference and produces the 21-nucleotide small interfering RNA component of the plant cell-to-cell silencing signal

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22439910

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Intra- and intercellular RNA interference in Arabidopsis thaliana requires components of the microRNA and heterochromatic silencing pathways

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22439910

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Expression of aberrant forms of AUXIN RESPONSE FACTOR8 stimulates parthenocarpy in Arabidopsis and tomato

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22439910

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2012-13-3-R20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22439910%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

26 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22439910%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

PubMed publication ID

22439910

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22439910%20AND%20SRC:MED&resulttype=core&format=json