Seeking an ancient enzyme in Methanococcus jannaschii using ORF, a program based on predicted secondary structure comparisons (Q30429814)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9501173%20AND%20SRC:MED&resulttype=core&format=json

10 November 2019

title

Seeking an ancient enzyme in Methanococcus jannaschii using ORF, a program based on predicted secondary structure comparisons (English)

1 reference

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10 November 2019

1

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10 November 2019

author name string

G D Rose

series ordinal

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9501173%20AND%20SRC:MED&resulttype=core&format=json

10 November 2019

language of work or name

English

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publication date

1 March 1998

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9501173%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

10 November 2019

published in

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10 November 2019

volume

95

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10 November 2019

issue

6

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10 November 2019

page(s)

2818-2823

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10 November 2019

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

A measure of success in fold recognition

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

Protein fold recognition by prediction-based threading

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

Purine biosynthesis in the domain Archaea without folates or modified folates

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

Extracting protein alignment models from the sequence database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

Protein topology recognition from secondary structure sequences: application of the hidden Markov models to the alpha class proteins.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

Perspectives in protein-fold recognition

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

Embedding strategies for effective use of information from multiple sequence alignments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

The structural alignment between two proteins: is there a unique answer?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

20 June 2018

1 reference

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Structure and stability of hyperstable proteins: glycolytic enzymes from hyperthermophilic bacterium Thermotoga maritima.

20 June 2018

1 reference

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A 3D sequence-independent representation of the protein data bank

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

Protein fold recognition by mapping predicted secondary structures.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

Mapping the protein universe

20 June 2018

1 reference

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Primary structure of cyclohydrolase (Mch) from Methanobacterium thermoautotrophicum (strain Marburg) and functional expression of the mch gene in Escherichia coli

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

dTMP biosynthesis in Archaea

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

In search of the ideal protein sequence

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

Structures of the modified folates in the extremely thermophilic archaebacterium Thermococcus litoralis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

Refined structures of substrate-bound and phosphate-bound thymidylate synthase from Lactobacillus casei

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

Prediction of protein secondary structure at better than 70% accuracy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

Issues in searching molecular sequence databases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

Detection of conserved segments in proteins: iterative scanning of sequence databases with alignment blocks

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

Protein superfamilies and domain superfolds

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

SCOP: a structural classification of proteins database for the investigation of sequences and structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

The catalytic mechanism and structure of thymidylate synthase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

The multiplicity of domains in proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

RASMOL: biomolecular graphics for all

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

A general method applicable to the search for similarities in the amino acid sequence of two proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

Rapid and sensitive protein similarity searches

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

Structure, multiple site binding, and segmental accommodation in thymidylate synthase on binding dUMP and an anti-folate

20 June 2018

1 reference

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Finding sequence motifs in groups of functionally related proteins

20 June 2018

1 reference

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Deoxyuridylate-hydroxymethylase of bacteriophage SPO1.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

Assessment of protein models with three-dimensional profiles

20 June 2018

1 reference

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The Protein Data Bank: a computer-based archival file for macromolecular structures

20 June 2018

1 reference

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Prediction of the Secondary Structure of Proteins from their Amino Acid Sequence

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

Thymidylate Synthetase from Escherichia coli K12. Purification, and Dependence of Kinetic Properties on Sugar Conformation and Size of the 2' Substituent

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=19652

Methanococcus jannaschii sp. nov., an extremely thermophilic methanogen from a submarine hydrothermal vent

20 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.6.2818

Purification and partial characterization of a putative thymidylate synthase from Methanobacterium thermoautotrophicum

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.6.2818

Protein thermal stability: hydrogen bonds or internal packing?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.6.2818

Inhibitory effects of long-chain acyl coenzyme a analogues on rat liver acetyl coenzyme a carboxylase

21 January 2018

1 reference

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Statistical potentials extracted from protein structures: how accurate are they?

21 January 2018

1 reference

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Failures of inverse folding and threading with gapped alignment

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9501173

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

How many fold types of protein are there in nature?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9501173

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Thymidylate synthetase and its relationship to dihydrofolate reductase

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9501173

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.95.6.2818

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9501173%20AND%20SRC:MED&resulttype=core&format=json

10 November 2019

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9501173%20AND%20SRC:MED&resulttype=core&format=json

10 November 2019

PubMed publication ID

9501173

1 reference