Structural imperatives impose diverse evolutionary constraints on helical membrane proteins (Q30381494)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19815527%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

title

Structural imperatives impose diverse evolutionary constraints on helical membrane proteins (English)

1 reference

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9 February 2020

1 reference

evolutionary constraint

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2

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9 February 2020

4

James U Bowie

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9 February 2020

author name string

Amit Oberai

series ordinal

1

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9 February 2020

Frank K Pettit

series ordinal

3

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9 February 2020

language of work or name

English

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publication date

6 October 2009

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Proceedings of the National Academy of Sciences of the United States of America

9 February 2020

published in

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9 February 2020

volume

106

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9 February 2020

issue

42

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9 February 2020

page(s)

17747-17750

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hERG gating microdomains defined by S6 mutagenesis and molecular modeling.

9 February 2020

cites work

1 reference

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Evolutionary analyses of KCNQ1 and HERG voltage-gated potassium channel sequences reveal location-specific susceptibility and augmented chemical severities of arrhythmogenic mutations

20 June 2018

1 reference

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Atomic structure of a voltage-dependent K+ channel in a lipid membrane-like environment

20 June 2018

1 reference

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Structural models for the KCNQ1 voltage-gated potassium channel

20 June 2018

1 reference

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HotPatch: a statistical approach to finding biologically relevant features on protein surfaces

20 June 2018

1 reference

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A limited universe of membrane protein families and folds

20 June 2018

1 reference

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OPM: orientations of proteins in membranes database

20 June 2018

1 reference

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Solving the membrane protein folding problem

20 June 2018

1 reference

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Loss of protein structure stability as a major causative factor in monogenic disease.

20 June 2018

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Sequence variation in G-protein-coupled receptors: analysis of single nucleotide polymorphisms

20 June 2018

1 reference

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Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders

20 June 2018

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Structure of bovine rhodopsin in a trigonal crystal form.

20 June 2018

1 reference

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Computational analysis of alpha-helical membrane protein structure: implications for the prediction of 3D structural models.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764890

Transmembrane protein domains rarely use covalent domain recombination as an evolutionary mechanism

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764890

Natural variation in human membrane transporter genes reveals evolutionary and functional constraints

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764890

Scoring residue conservation

20 June 2018

1 reference

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How membranes shape protein structure.

20 June 2018

1 reference

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Crystal structure of the calcium pump of sarcoplasmic reticulum at 2.6 A resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764890

Internal packing of helical membrane proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764890

Membrane protein folding and stability: physical principles

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764890

PASSML: combining evolutionary inference and protein secondary structure prediction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764890

Assessing the impact of secondary structure and solvent accessibility on protein evolution.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764890

Structure-based prediction of the stability of transmembrane helix–helix interactions: The sequence dependence of glycophorin A dimerization

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764890

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764890

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764890

Dominant forces in protein folding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764890

Packing of α-helices: Geometrical constraints and contact areas

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764890

Detecting selection using a single genome sequence of M. tuberculosis and P. falciparum

20 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0906390106

Distribution analysis of nonsynonymous polymorphisms within the G-protein-coupled receptor gene family

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0906390106

Deciphering the message in protein sequences: tolerance to amino acid substitutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0906390106

Origins of globular structure in proteins

21 January 2018

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PQS: a protein quaternary structure file server

21 January 2018

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Selective constraints, amino acid composition, and the rate of protein evolution

21 January 2018

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12 December 2020

Side chains in transmembrane helices are shorter at helix-helix interfaces

1 reference

12 December 2020

Excess Polymorphisms in Genes for Membrane Proteins in Plasmodium falciparum

1 reference

12 December 2020

Protein Evolution Is Faster Outside the Cell

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12 December 2020

Identifiers

DOI

10.1073/PNAS.0906390106

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19815527%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

0 references

1 reference

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9 February 2020

PubMed publication ID

19815527

1 reference