DEAD-box proteins: the driving forces behind RNA metabolism (Q29619863)

Europe PubMed Central

title

DEAD-box proteins: the driving forces behind RNA metabolism (English)

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30 April 2017

author name string

Rocak S

series ordinal

1

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30 April 2017

Linder P

series ordinal

2

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30 April 2017

language of work or name

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30 April 2017

publication date

March 2004

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Nature Reviews Molecular Cell Biology

30 April 2017

published in

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30 April 2017

volume

5

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issue

3

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30 April 2017

page(s)

232-41

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Helicases: amino acid sequence comparisons and structure-function relationships

30 April 2017

cites work

1 reference

31 March 2020

Birth of the D-E-A-D box

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The Q motif: a newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis

31 March 2020

1 reference

The Newly Identified Q Motif of DEAD Box Heicases IS Involved in Adenine Recognition

31 March 2020

1 reference

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

31 March 2020

1 reference

Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families.

31 March 2020

1 reference

The purified yeast pre-mRNA splicing factor PRP2 is an RNA-dependent NTPase.

31 March 2020

1 reference

Crystal structure of a DExx box DNA helicase

31 March 2020

1 reference

Major Domain Swiveling Revealed by the Crystal Structures of Complexes of E. coli Rep Helicase Bound to Single-Stranded DNA and ADP

31 March 2020

1 reference

Structure of the hepatitis C virus RNA helicase domain

31 March 2020

1 reference

Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: the crystal structure provides insights into the mode of unwinding

31 March 2020

1 reference

Crystal structure of RNA helicase from genotype 1b hepatitis C virus. A feasible mechanism of unwinding duplex RNA

31 March 2020

1 reference

Crystal structure of the ATPase domain of translation initiation factor 4A from Saccharomyces cerevisiae--the prototype of the DEAD box protein family

31 March 2020

1 reference

Crystal structure of yeast initiation factor 4A, a DEAD-box RNA helicase

31 March 2020

1 reference

Crystal structure of a DEAD box protein from the hyperthermophile Methanococcus jannaschii

31 March 2020

1 reference

Crystal structure of the BstDEAD N-terminal domain: a novel DEAD protein from Bacillus stearothermophilus

31 March 2020

1 reference

Helicase structure and mechanism

31 March 2020

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Modularity and specialization in superfamily 1 and 2 helicases

31 March 2020

1 reference

DExD/H box RNA helicases: from generic motors to specific dissociation functions

31 March 2020

1 reference

A novel domain within the DEAD-box protein DP103 is essential for transcriptional repression and helicase activity

31 March 2020

1 reference

Regulation of nuclear receptor transcriptional activity by a novel DEAD box RNA helicase (DP97)

31 March 2020

1 reference

Synergism between p68 RNA helicase and the transcriptional coactivators CBP and p300

31 March 2020

1 reference

Deletion of MUD2, the yeast homolog of U2AF65, can bypass the requirement for sub2, an essential spliceosomal ATPase

31 March 2020

1 reference

Specific alterations of U1-C protein or U1 small nuclear RNA can eliminate the requirement of Prp28p, an essential DEAD box splicing factor

31 March 2020

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Active disruption of an RNA-protein interaction by a DExH/D RNA helicase

31 March 2020

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Birth of the snoRNPs: the evolution of the modification-guide snoRNAs.

31 March 2020

1 reference

31 March 2020

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The DEAD-box RNA helicase SrmB is involved in the assembly of 50S ribosomal subunits in Escherichia coli.

31 March 2020

1 reference

Dbp5p, a cytosolic RNA helicase, is required for poly(A)+ RNA export

31 March 2020

1 reference

Dbp5, a DEAD-box protein required for mRNA export, is recruited to the cytoplasmic fibrils of nuclear pore complex via a conserved interaction with CAN/Nup159p

31 March 2020

1 reference

Dbp5p/Rat8p is a yeast nuclear pore-associated DEAD-box protein essential for RNA export

31 March 2020

1 reference

The mRNA export factor Dbp5 is associated with Balbiani ring mRNP from gene to cytoplasm

31 March 2020

1 reference

An early function during transcription for the yeast mRNA export factor Dbp5p/Rat8p suggested by its genetic and physical interactions with transcription factor IIH components

31 March 2020

1 reference

eIF4A: the godfather of the DEAD box helicases

31 March 2020

1 reference

The p20 and Ded1 proteins have antagonistic roles in eIF4E-dependent translation in Saccharomyces cerevisiae.

31 March 2020

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Requirement of the DEAD-Box protein ded1p for messenger RNA translation

31 March 2020

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A mutant allele of essential, general translation initiation factor DED1 selectively inhibits translation of a viral mRNA

31 March 2020

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The requirement for eukaryotic initiation factor 4A (elF4A) in translation is in direct proportion to the degree of mRNA 5' secondary structure.

31 March 2020

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Mitochondrial splicing requires a protein from a novel helicase family

31 March 2020

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A DEAD-box protein functions as an ATP-dependent RNA chaperone in group I intron splicing

31 March 2020

1 reference

Cloning and characterization of MDDX28, a putative dead-box helicase with mitochondrial and nuclear localization

31 March 2020

1 reference

Disruption of a Gene Encoding a Novel Mitochondrial DEAD-Box Protein in Trypanosoma brucei Affects Edited mRNAs

31 March 2020

1 reference

A DEAD-box RNA helicase in the Escherichia coli RNA degradosome

31 March 2020

1 reference

Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3' exonuclease and a DEAD-box RNA helicase

31 March 2020

1 reference

The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex

31 March 2020

1 reference

Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3' end formation of 5.8S rRNA in Saccharomyces cerevisiae

31 March 2020

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The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes.

31 March 2020

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Xp54, the Xenopus homologue of human RNA helicase p54, is an integral component of stored mRNP particles in oocytes

31 March 2020

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A conserved role of a DEAD box helicase in mRNA masking

31 March 2020

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Functional conservation of Dhh1p, a cytoplasmic DExD/H-box protein present in large complexes

31 March 2020

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An extensive network of coupling among gene expression machines

31 March 2020

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Pre-mRNA splicing and mRNA export linked by direct interactions between UAP56 and Aly

31 March 2020

1 reference

The DECD box putative ATPase Sub2p is an early mRNA export factor

31 March 2020

1 reference

Splicing factor Sub2p is required for nuclear mRNA export through its interaction with Yra1p

31 March 2020

1 reference

Gemin3: A novel DEAD box protein that interacts with SMN, the spinal muscular atrophy gene product, and is a component of gems

31 March 2020

1 reference

Fal1p is an essential DEAD-box protein involved in 40S-ribosomal-subunit biogenesis in Saccharomyces cerevisiae

31 March 2020

1 reference

A comprehensive web resource on RNA helicases from the baker's yeast Saccharomyces cerevisiae

31 March 2020

1 reference

Ded1p, a DEAD-box protein required for translation initiation in Saccharomyces cerevisiae, is an RNA helicase

31 March 2020

1 reference

RNA helicase activity associated with the human p68 protein

31 March 2020

1 reference

Characterization of the cold stress-induced cyanobacterial DEAD-box protein CrhC as an RNA helicase

31 March 2020

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The "DEAD box" protein DbpA interacts specifically with the peptidyltransferase center in 23S rRNA.

31 March 2020

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The Escherichia coli DEAD protein DbpA recognizes a small RNA hairpin in 23S rRNA.

31 March 2020

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The carboxy-terminal domain of the DExDH protein YxiN is sufficient to confer specificity for 23S rRNA.

31 March 2020

1 reference

The Saccharomyces cerevisiae Prp5 protein has RNA-dependent ATPase activity with specificity for U2 small nuclear RNA.

31 March 2020

1 reference

DExD/H-box proteins and their partners: helping RNA helicases unwind

31 March 2020

1 reference

Bidirectional RNA helicase activity of eucaryotic translation initiation factors 4A and 4F

31 March 2020

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Adenosine 5'-O-(3-thio)triphosphate (ATPgammaS) is a substrate for the nucleotide hydrolysis and RNA unwinding activities of eukaryotic translation initiation factor eIF4A

31 March 2020

1 reference

The DEAD box protein eIF4A. 1. A minimal kinetic and thermodynamic framework reveals coupled binding of RNA and nucleotide

31 March 2020

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The DEAD box protein eIF4A. 2. A cycle of nucleotide and RNA-dependent conformational changes

31 March 2020

1 reference

Characterization of yeast seryl-tRNA synthetase active site mutants with improved discrimination against substrate analogues

31 March 2020

1 reference

A steady-state and pre-steady-state kinetic analysis of the NTPase activity associated with the hepatitis C virus NS3 helicase domain

31 March 2020

1 reference

Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23S rRNA.

31 March 2020

1 reference

Biochemical and kinetic characterization of the RNA helicase activity of eukaryotic initiation factor 4A

31 March 2020

1 reference

Spliceosomal snRNAs: Mg(2+)-dependent chemistry at the catalytic core?

31 March 2020

1 reference

Unwinding the 'Gordian knot' of helicase action.

31 March 2020

1 reference

The ATPase, RNA unwinding, and RNA binding activities of recombinant p68 RNA helicase

31 March 2020

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Energy flow considerations and thermal fluctuational opening of DNA base pairs at a replicating fork: unwinding consistent with observed replication rates

31 March 2020

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Comparative characterization of two DEAD-box RNA helicases in superfamily II: human translation-initiation factor 4A and hepatitis C virus non-structural protein 3 (NS3) helicase

31 March 2020

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The DExH protein NPH-II is a processive and directional motor for unwinding RNA

31 March 2020

1 reference

Insights into the structure and function of a guide RNP

31 March 2020

1 reference

Regulation of cold shock-induced RNA helicase gene expression in the Cyanobacterium anabaena sp. strain PCC 7120.

31 March 2020

1 reference

Low temperature regulated DEAD-box RNA helicase from the Antarctic archaeon, Methanococcoides burtonii

31 March 2020

1 reference

ATP-binding site of adenylate kinase: mechanistic implications of its homology with ras-encoded p21, F1-ATPase, and other nucleotide-binding proteins

31 March 2020

1 reference

RNA helicase dynamics in pre-mRNA splicing

31 March 2020

1 reference

Identification of an RNA-dependent ATPase activity in mammalian U5 snRNPs

31 March 2020

1 reference

Evolution of intron/exon structure of DEAD helicase family genes in Arabidopsis, Caenorhabditis, and Drosophila

31 March 2020

1 reference

The human DDX and DHX gene families of putative RNA helicases

31 March 2020

1 reference

31 March 2020

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Consolidated OpenCitations Corpus – April 2017

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1026226966

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PubMed publication ID

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30 April 2017

Consolidated OpenCitations Corpus – April 2017