The Songbird Neurogenomics (SoNG) Initiative: community-based tools and strategies for study of brain gene function and evolution (Q28754888)

22 June 2017

title

The Songbird Neurogenomics (SoNG) Initiative: community-based tools and strategies for study of brain gene function and evolution (English)

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22 June 2017

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22

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Jenny Drnevich

8

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Kirstin Replogle

1

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Dennis Hasselquist

12

object named as

Dennis Hasselquist

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Staffan Bensch

5

object named as

Staffan Bensch

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Claudio V Mello

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Eliot A Brenowitz

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Arthur P Arnold

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Peter V Lovell

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Gregory F Ball

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Juli Wade

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Mark Band

4

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22 June 2017

Shu Dong

7

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Margaret Ferris

9

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Julia M George

10

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22 June 2017

George Gong

11

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Alvaro G Hernandez

13

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Ryan Kim

14

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Harris A Lewin

15

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22 June 2017

Lei Liu

16

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Sara Naurin

19

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Sandra Rodriguez-Zas

20

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Jyothi Thimmapuram

21

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David F Clayton

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Kirstin Replogle

1

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22 June 2017

Jenny Drnevich

8

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22 June 2017

language of work or name

English

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publication date

18 March 2008

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22 June 2017

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22 June 2017

volume

9

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22 June 2017

issue

1

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page(s)

131

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describes a project that uses

22 June 2017

limma

object named as

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/2329646

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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Genomic resources for songbird research and their use in characterizing gene expression during brain development

16 March 2017

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16 March 2017

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Dynamic role of postsynaptic caspase-3 and BIRC4 in zebra finch song-response habituation

16 March 2017

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16 March 2017

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16 March 2017

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16 March 2017

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16 March 2017

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16 March 2017

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16 March 2017

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Fish and chips: various methodologies demonstrate utility of a 16,006-gene salmonid microarray

16 March 2017

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ESTIMA, a tool for EST management in a multi-project environment

16 March 2017

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Cross-species hybridisation of human and bovine orthologous genes on high density cDNA microarrays

16 March 2017

1 reference

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Phylogeny and diversification of the largest avian radiation

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Biologically meaningful expression profiling across species using heterologous hybridization to a cDNA microarray

16 March 2017

1 reference

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Statistical tests for differential expression in cDNA microarray experiments

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Summaries of Affymetrix GeneChip probe level data

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Significance analysis of microarrays applied to the ionizing radiation response

16 March 2017

1 reference

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CAP3: A DNA sequence assembly program

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Normalization and subtraction: two approaches to facilitate gene discovery

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Birdsong and human speech: common themes and mechanisms

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

For whom the bird sings: context-dependent gene expression

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

The International Protein Index: an integrated database for proteomics experiments

7 April 2017

1 reference

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Assessing gene significance from cDNA microarray expression data via mixed models

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Analysis of variance for gene expression microarray data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Genome-wide analysis of DNA copy-number changes using cDNA microarrays

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Song-induced ZENK gene expression in auditory pathways of songbird brain and its relation to the song control system

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Song presentation induces gene expression in the songbird forebrain

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

TECHNICAL ADVANCES: A microarray for large-scale genomic and transcriptional analyses of the zebra finch (Taeniopygia guttata) and other passerines

7 April 2017

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Fast-X on the Z: rapid evolution of sex-linked genes in birds

3 June 2018

1 reference

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Cross-species analysis of gene expression in non-model mammals: reproducibility of hybridization on high density oligonucleotide microarrays

3 June 2018

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Systematic placement of an enigmatic Southeast Asian taxon Eupetes macrocerus and implications for the biogeography of a main songbird radiation, the Passerida

3 June 2018

1 reference

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Cross-species microarray hybridizations: a developing tool for studying species diversity

3 June 2018

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Simple sequence repeats in zebra finch (Taeniopygia guttata) expressed sequence tags: a new resource for evolutionary genetic studies of passerines

3 June 2018

1 reference

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Large-scale identification of novel transcripts in the human genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Whole-genome re-sequencing

3 June 2018

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Derivation of species-specific hybridization-like knowledge out of cross-species hybridization results

3 June 2018

1 reference

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Microarray technology: beyond transcript profiling and genotype analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Activation and habituation of extracellular signal-regulated kinase phosphorylation in zebra finch auditory forebrain during song presentation.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

A cDNA microarray from the telencephalon of juvenile male and female zebra finches

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Songbird genomics: methods, mechanisms, opportunities, and pitfalls.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Cross-species comparison of gene expression between human and porcine tissue, using single microarray platform--preliminary results

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Phylogeny of Passerida (Aves: Passeriformes) based on nuclear and mitochondrial sequence data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Human speech and birdsong: communication and the social brain

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

A 3800 gene microarray for cattle functional genomics: comparison of gene expression in spleen, placenta, and brain

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Annotated expressed sequence tags and cDNA microarrays for studies of brain and behavior in the honey bee.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Localized Changes in Immediate-Early Gene Regulation during Sensory and Motor Learning in Zebra Finches

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Immediate-early gene responses in the avian song control system: cloning and expression analysis of the canary c-jun cDNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Repeated exposure to one song leads to a rapid and persistent decline in an immediate early gene's response to that song in zebra finch telencephalon.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Biological function of unannotated transcription during the early development of Drosophila melanogaster

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

The avian genome uncovered

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Localized brain activation specific to auditory memory in a female songbird

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Co-induction of activity-dependent genes in songbirds

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

FOS and ZENK responses in 45-day-old zebra finches vary with auditory stimulus and brain region, but not sex.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Multiple-laboratory comparison of microarray platforms

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Context-specific habituation of the zenk gene response to song in adult zebra finches

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Differential expression of the immediate early genes FOS and ZENK following auditory stimulation in the juvenile male and female zebra finch

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Rapidly learned song-discrimination without behavioral reinforcement in adult male zebra finches (Taeniopygia guttata).

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Localized immediate early gene expression related to the strength of song learning in socially reared zebra finches

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Calibration of avian molecular clocks

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2329646

Forebrain-enriched RNAs of the canary: a population analysis using hybridization kinetics

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18366674

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-9-131

1 reference

Dimensions Publication ID

22 June 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-9-131

PMC publication ID

2329646

0 references

1 reference