Prehistoric genomes reveal the genetic foundation and cost of horse domestication (Q28652656)

13

0 references

Ludovic Orlando

35

0 references

Clio Der Sarkissian

4

0 references

Thomas Sicheritz-Ponten

26

0 references

Michael Hofreiter

28

0 references

Tomas Marques-Bonet

29

0 references

Laurent Excoffier

32

0 references

Isabelle Dupanloup

8

0 references

Beth Shapiro

34

0 references

Mikkel Schubert

Mikkel Schubert

1

0 references

Maanasa Raghavan

Maanasa Raghavan

12

0 references

Luca Ermini

Luca Ermini

5

0 references

Bent Petersen

Bent Petersen

10

0 references

Thorfinn Korneliussen

Thorfinn S Korneliussen

14

0 references

Matteo Fumagalli

Matteo Fumagalli

11

0 references

David E. MacHugh

David E MacHugh

Marcus Thomas Pius Gilbert

22

0 references

M Thomas P Gilbert

30

0 references

Edward M. Rubin

25

Edward M Rubin

0 references

Leif Andersson

27

Leif Andersson

0 references

Rasmus Nielsen

31

Rasmus Nielsen

0 references

Aurelien Ginolhac

6

Aurélien Ginolhac

0 references

Jesper T Stenderup

16

Jesper Stenderup

0 references

Amhed M Vargas-Velazquez

15

Amhed M V Velazquez

0 references

Khaled A S Al-Rasheid

21

Khaled A S Al-Rasheid

0 references

Hákon Jónsson

2

Hákon Jónsson

0 references

Anders Albrechtsen

7

Anders Albrechtsen

0 references

Saleh A Alquraishi

20

Saleh A Alquraishi

0 references

Cindi A Hoover

17

Cindi A Hoover

0 references

Ahmed H. Alfarhan

19

Ahmed H Alfarhan

0 references

Carl-Johan Rubin

18

Carl-Johan Rubin

0 references

author name string

Dan Chang

3

0 references

Adrien Foucal

9

0 references

Ted Kalbfleisch

23

0 references

James N MacLeod

Proceedings of the National Academy of Sciences of the United States of America

24

0 references

language of work or name

English

0 references

publication date

30 December 2014

0 references

published in

0 references

volume

111

0 references

issue

52

0 references

page(s)

E5661-9

0 references

cites work

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17 March 2017

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Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

17 March 2017

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17 March 2017

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Genomic evidence for island population conversion resolves conflicting theories of polar bear evolution

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Analyses of pig genomes provide insight into porcine demography and evolution

17 March 2017

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A high-coverage genome sequence from an archaic Denisovan individual

17 March 2017

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Mutations in DMRT3 affect locomotion in horses and spinal circuit function in mice

17 March 2017

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Metagenomic microbial community profiling using unique clade-specific marker genes

17 March 2017

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A genome-wide association study reveals loci influencing height and other conformation traits in horses

17 March 2017

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Bayesian phylogenetics with BEAUti and the BEAST 1.7

17 March 2017

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Mitochondrial genomes from modern horses reveal the major haplogroups that underwent domestication

17 March 2017

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A high density SNP array for the domestic horse and extant Perissodactyla: utility for association mapping, genetic diversity, and phylogeny studies

17 March 2017

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Whole mitochondrial genome sequencing of domestic horses reveals incorporation of extensive wild horse diversity during domestication

17 March 2017

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A massively parallel sequencing approach uncovers ancient origins and high genetic variability of endangered Przewalski's horses

17 March 2017

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Inference of human population history from individual whole-genome sequences

17 March 2017

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Whole-exome re-sequencing in a family quartet identifies POP1 mutations as the cause of a novel skeletal dysplasia

17 March 2017

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Origin and history of mitochondrial DNA lineages in domestic horses

17 March 2017

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Loss of Ca(v)1.3 (CACNA1D) function in a human channelopathy with bradycardia and congenital deafness

17 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

A Draft Sequence of the Neandertal Genome

17 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Ancient human genome sequence of an extinct Palaeo-Eskimo

17 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Genome sequence, comparative analysis, and population genetics of the domestic horse

17 March 2017

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Coat color variation at the beginning of horse domestication

17 March 2017

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Novel high-resolution characterization of ancient DNA reveals C > U-type base modification events as the sole cause of post mortem miscoding lesions

17 March 2017

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Patterns of damage in genomic DNA sequences from a Neandertal

17 March 2017

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17 March 2017

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Population structure and eigenanalysis

17 March 2017

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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

17 March 2017

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NIPBL, encoding a homolog of fungal Scc2-type sister chromatid cohesion proteins and fly Nipped-B, is mutated in Cornelia de Lange syndrome

17 March 2017

1 reference

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Limited number of patrilines in horse domestication

17 March 2017

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A novel marker of tissue junctions, collagen XXII

17 March 2017

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Mitochondrial DNA and the origins of the domestic horse

17 March 2017

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MRBAYES: Bayesian inference of phylogenetic trees

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Widespread origins of domestic horse lineages

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Median-joining networks for inferring intraspecific phylogenies

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Genome sequencing highlights the dynamic early history of dogs

17 March 2017

1 reference

Crossref

https://api.crossref.org/works/10.1073/PNAS.1416991111

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

7 April 2017

https://api.crossref.org/works/10.1073%2FPNAS.1416991111

Testing for ancient admixture between closely related populations

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Distribution and intensity of constraint in mammalian genomic sequence

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Robust demographic inference from genomic and SNP data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Genetic diversity in the modern horse illustrated from genome-wide SNP data

9 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Inference of population splits and mixtures from genome-wide allele frequency data

9 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX.

9 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Shotgun microbial profiling of fossil remains

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

A paleogenomic perspective on evolution and gene function: new insights from ancient DNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

The UCSC Genome Browser database: 2014 update

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Characterizing DNA preservation in degraded specimens of Amara alpina (Carabidae: Coleoptera).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Somatic mutations in ATP1A1 and CACNA1D underlie a common subtype of adrenal hypertension.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Somatic and germline CACNA1D calcium channel mutations in aldosterone-producing adenomas and primary aldosteronism

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Identification of genetic variation on the horse y chromosome and the tracing of male founder lineages in modern breeds

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Genome-wide analysis reveals selection for important traits in domestic horse breeds.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Strong signatures of selection in the domestic pig genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Skeletal muscle α-actin diseases (actinopathies): pathology and mechanisms.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Reconstructing the origin and spread of horse domestication in the Eurasian steppe

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

JPH3 repeat expansions cause a progressive akinetic-rigid syndrome with severe dementia and putaminal rim in a five-generation African-American family

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Longevity candidate genes and their association with personality traits in the elderly

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Evolutionary conserved longevity genes and human cognitive abilities in elderly cohorts

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Spinal muscular atrophy with pontocerebellar hypoplasia is caused by a mutation in the VRK1 gene

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

The earliest horse harnessing and milking

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

The accumulation of deleterious mutations in rice genomes: a hypothesis on the cost of domestication

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

NIPBL mutations and genetic heterogeneity in Cornelia de Lange syndrome.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Prenatal skeletal dysplasia phenotype in severe MLII alpha/beta with novel GNPTAB mutation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Endothelial Cell Mineralocorticoid Receptors Regulate Deoxycorticosterone/Salt-Mediated Cardiac Remodeling and Vascular Reactivity But Not Blood Pressure

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Glutamate receptor δ 1 (GRID1) genetic variation and brain structure in schizophrenia

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

MSTN genotype (g.66493737C/T) association with speed indices in Thoroughbred racehorses

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Discovery of lost diversity of paternal horse lineages using ancient DNA.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Targets of selection in the Thoroughbred genome contain exercise-relevant gene SNPs associated with elite racecourse performance

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Association of sequence variants in CKM (creatine kinase, muscle) and COX4I2 (cytochrome c oxidase, subunit 4, isoform 2) genes with racing performance in Thoroughbred horses

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

CACNA1C (rs1006737) is associated with schizophrenia

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

The legacy of domestication: accumulation of deleterious mutations in the dog genome

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

Impaired motor coordination in mice lacking neural recognition molecule NB-3 of the contactin/F3 subgroup

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284583

27 November 2018

Identifiers

DOI

10.1073/PNAS.1416991111

1 reference

ADS bibcode

2014PNAS..111E5661S

0 references

1 reference

1 reference

PubMed publication ID

25512547

1 reference