Crystal structures of an A-form duplex with single-adenosine bulges and a conformational basis for site-specific RNA self-cleavage (Q27733419)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8807843%20AND%20SRC:MED&resulttype=core&format=json

19 October 2019

title

Crystal structures of an A-form duplex with single-adenosine bulges and a conformational basis for site-specific RNA self-cleavage (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8807843%20AND%20SRC:MED&resulttype=core&format=json

19 October 2019

0 references

Christopher T. Workman

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8807843%20AND%20SRC:MED&resulttype=core&format=json

19 October 2019

author name string

Portmann S

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8807843%20AND%20SRC:MED&resulttype=core&format=json

19 October 2019

Grimm S

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8807843%20AND%20SRC:MED&resulttype=core&format=json

19 October 2019

Usman N

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8807843%20AND%20SRC:MED&resulttype=core&format=json

19 October 2019

Egli M

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8807843%20AND%20SRC:MED&resulttype=core&format=json

19 October 2019

publication date

1 March 1996

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8807843%20AND%20SRC:MED&resulttype=core&format=json

19 October 2019

published in

Chemistry and Biology

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8807843%20AND%20SRC:MED&resulttype=core&format=json

19 October 2019

volume

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8807843%20AND%20SRC:MED&resulttype=core&format=json

19 October 2019

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8807843%20AND%20SRC:MED&resulttype=core&format=json

19 October 2019

page(s)

173-184

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8807843%20AND%20SRC:MED&resulttype=core&format=json

A difference in the importance of bulged nucleotides and their parent base pairs in the binding of transcription factor IIIA to Xenopus 5S RNA and 5S RNA genes

19 October 2019

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

A bulge structure in HIV-1 TAR RNA is required for Tat binding and Tat-mediated trans-activation

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Refolded HIV-1 tat protein protects both bulge and loop nucleotides in TAR RNA from ribonucleolytic cleavage

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Role of a bulged A residue in a specific RNA-protein interaction

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Crystal structure of an RNA bacteriophage coat protein–operator complex

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Physical studies of 5S RNA variants at position 66.

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

The guanosine binding site of the Tetrahymena ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Self-splicing of group I introns

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Self-splicing group II and nuclear pre-mRNA introns: how similar are they?

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Effects of mutations of the bulged nucleotide in the conserved P7 pairing element of the phage T4 td intron on ribozyme function

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Mutational analysis of the yeast U2 snRNA suggests a structural similarity to the catalytic core of group I introns

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

RNAs and ribonucleoproteins in recognition and catalysis

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Branch nucleophile selection in pre-mRNA splicing: evidence for the bulged duplex model

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Use of lead(II) to probe the structure of large RNA's. Conformation of the 3' terminal domain of E. coli 16S rRNA and its involvement in building the tRNA binding sites

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Lead cleavage sites in the core structure of group I intron-RNA

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Thermodynamic and spectroscopic study of bulge loops in oligoribonucleotides.

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Effects of single-base bulges on intercalator binding to small RNA and DNA hairpins and a ribosomal RNA fragment.

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Thermodynamic characterization of deoxyribooligonucleotide duplexes containing bulges.

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Thermal stability of RNA hairpins containing a four-membered loop and a bulge nucleotide

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

DNA bending by the bulge defect

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Bulge loops used to measure the helical twist of RNA in solution

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

RNA bulges and the helical periodicity of double-stranded RNA

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Kinking of RNA helices by bulged bases, and the structure of the human immunodeficiency virus transactivator response element

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Major Groove Accessibility of RNA

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Conformation of the TAR RNA-Arginine Complex by NMR Spectroscopy

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Molecular recognition in the bovine immunodeficiency virus Tat peptide-TAR RNA complex

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Extra adenosine stacks into the self-complementary d(CGCAGAATTCGCG) duplex in solution

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Extrahelical adenosine stacks into right-handed DNA: solution conformation of the d(C-G-C-A-G-A-G-C-T-C-G-C-G) duplex deduced from distance geometry analysis of nuclear Overhauser effect spectra.

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Preferential location of bulged guanosine internal to a G.cntdot.C tract by proton NMR

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Binding of 9-aminoacridine to bulged-base DNA oligomers from a frame-shift hot spot

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Conformation of a bulge-containing oligomer from a hot-spot sequence by NMR and energy minimization

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Two-dimensional 1H and 31P NMR spectra and restrained molecular dynamics structure of an extrahelical adenosine tridecamer oligodeoxyribonucleotide duplex

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

NMR structural refinement of an extrahelical adenosine tridecamer d(CGCAGAATTCGCG)2 via a hybrid relaxation matrix procedure

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Extra thymidine stacks into the d(CTGGTGCGG).d(CCGCCCAG) duplex. An NMR and modelbuilding study

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Conformational transitions in cytidine bulge-containing deoxytridecanucleotide duplexes: extra cytidine equilibrates between looped out (low temperature) and stacked (elevated temperature) conformations in solution

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Bulge-out structures in the single-stranded trimer AUA and in the duplex (CUGGUGCGG).(CCGCCCAG). A model-building and NMR study

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Three-dimensional structures of bulge-containing DNA fragments

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Three-dimensional structure of a hammerhead ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Conformational influence of the ribose 2'-hydroxyl group: Crystal structures of DNA-RNA chimeric duplexes

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

A single 2'-hydroxyl group converts B-DNA to A-DNA. Crystal structure of the DNA-RNA chimeric decamer duplex d(CCGGC)r(G)d(CCGG) with a novel intermolecular G-C base-paired quadruplet

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Solution structure of an unusually stable RNA hairpin, 5GGAC(UUCG)GUCC

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

The crystal structure of d(CCCCGGGG): a new A-form variant with an extended backbone conformation

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

The crystal structure of r(CCCCGGGG) in two distinct lattices

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Bulge-induced bends in RNA: quantification by transient electric birefringence

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Three-Dimensional Tertiary Structure of Yeast Phenylalanine Transfer RNA

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Structure of yeast phenylalanine tRNA at 3 Å resolution

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Crystallization and preliminary X-ray diffraction analysis of double-helical RNA octamers

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Pseudo-rotation in the hydrolysis of phosphate esters

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Crystallographic and biochemical investigation of the lead(II)-catalyzed hydrolysis of yeast phenylalanine tRNA

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Large scale chemical synthesis, purification and crystallization of RNA-DNA chimeras

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Synthesis, deprotection, analysis and purification of RNA and ribozymes

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

Free R value: a novel statistical quantity for assessing the accuracy of crystal structures

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

The CCP4 suite: programs for protein crystallography

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021

AMoRe: an automated package for molecular replacement

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2896%2990260-4

7 January 2021