Conformational transition of Sec machinery inferred from bacterial SecYE structures (Q27652527)

11

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Naoshi Dohmae

6

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Ryuichiro Ishitani

4

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author name string

Tomoya Tsukazaki

1

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Hiroyuki Mori

2

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Shuya Fukai

3

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Takaharu Mori

5

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Anna Perederina

7

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Yuji Sugita

8

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Dmitry G Vassylyev

9

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Koreaki Ito

Two translocating hydrophilic segments of a nascent chain span the ER membrane during multispanning protein topogenesis

10

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language of work or name

English

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publication date

16 October 2008

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published in

Nature

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volume

455

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issue

7215

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page(s)

988-91

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cites work

1 reference

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Ribosome binding of a single copy of the SecY complex: implications for protein translocation

20 March 2017

1 reference

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Preprotein-controlled catalysis in the helicase motor of SecA

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

Structure of the E. coli protein-conducting channel bound to a translating ribosome

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

X-ray structure of a protein-conducting channel

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

Nucleotide control of interdomain interactions in the conformational reaction cycle of SecA

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

Three-dimensional structure of the bacterial protein-translocation complex SecYEG

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

Cross-talk between catalytic and regulatory elements in a DEAD motor domain is essential for SecA function

20 March 2017

1 reference

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Protein translocation across the eukaryotic endoplasmic reticulum and bacterial plasma membranes

20 March 2017

1 reference

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Bacterial protein secretion through the translocase nanomachine

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

Different modes of SecY-SecA interactions revealed by site-directed in vivo photo-cross-linking

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

Oligomeric states of the SecA and SecYEG core components of the bacterial Sec translocon

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

Investigating the SecY plug movement at the SecYEG translocation channel.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

Disulfide bridge formation between SecY and a translocating polypeptide localizes the translocation pore to the center of SecY.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

Structure and function of SecA, the preprotein translocase nanomotor

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

Biochemical characterization of a mutationally altered protein translocase: proton motive force stimulation of the initiation phase of translocation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

The Sec protein-translocation pathway.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

An essential amino acid residue in the protein translocation channel revealed by targeted random mutagenesis of SecY

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

SecYEG and SecA Are the Stoichiometric Components of Preprotein Translocase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

SecA protein hydrolyzes ATP and is an essential component of the protein translocation ATPase of Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

Crystal structure of the translocation ATPase SecA from Thermus thermophilus reveals a parallel, head-to-head dimer.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

Signal sequence recognition in posttranslational protein transport across the yeast ER membrane.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

The plug domain of the SecY protein stabilizes the closed state of the translocation channel and maintains a membrane seal

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

Protein translocation is mediated by oligomers of the SecY complex with one SecY copy forming the channel.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

Fluorescence resonance energy transfer analysis of protein translocase. SecYE from Thermus thermophilus HB8 forms a constitutive oligomer in membranes.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

SecA promotes preprotein translocation by undergoing ATP-driven cycles of membrane insertion and deinsertion.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2590585

Separation of 18 6-aminoquinolyl-carbamyl-amino acids by ion-pair chromatography

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18923527

12 December 2020

inferred from PubMed ID database lookup

A molecular switch in SecA protein couples ATP hydrolysis to protein translocation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18923527

12 December 2020

inferred from PubMed ID database lookup

Processing of X-ray diffraction data collected in oscillation mode

1 reference

https://api.crossref.org/works/10.1038%2FNATURE07421

7 January 2021

[27] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods.

1 reference

https://api.crossref.org/works/10.1038%2FNATURE07421

7 January 2021

Methods used in the structure determination of bovine mitochondrial F1 ATPase

1 reference

https://api.crossref.org/works/10.1038%2FNATURE07421

7 January 2021

Phase combination and cross validation in iterated density-modification calculations

1 reference

https://api.crossref.org/works/10.1038%2FNATURE07421

7 January 2021

Improved methods for building protein models in electron density maps and the location of errors in these models

1 reference

https://api.crossref.org/works/10.1038%2FNATURE07421

7 January 2021

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

1 reference

https://api.crossref.org/works/10.1038%2FNATURE07421

7 January 2021

MOLREP: an Automated Program for Molecular Replacement

1 reference

https://api.crossref.org/works/10.1038%2FNATURE07421

7 January 2021

Structural basis for substrate loading in bacterial RNA polymerase

1 reference

https://api.crossref.org/works/10.1038%2FNATURE07421

7 January 2021

PROCHECK: a program to check the stereochemical quality of protein structures

1 reference

https://api.crossref.org/works/10.1038%2FNATURE07421

7 January 2021

Cloning, expression, purification, crystallization and initial crystallographic analysis of the preprotein translocation ATPase SecA from Thermus thermophilus

1 reference

https://api.crossref.org/works/10.1038%2FNATURE07421

7 January 2021

Mapping the sites of interaction between SecY and SecE by cysteine scanning mutagenesis.

1 reference

https://api.crossref.org/works/10.1038%2FNATURE07421

7 January 2021